Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EIAFNCCK_1 | 1736211 | 1737638 | fexA | ARO:3002704 | fexA | 97.47 | 100.00 | AJ549214.1 |
| EIAFNCCK_1 | 1721847 | 1722584 | ErmB | ARO:3000375 | ErmB | 99.18 | 98.79 | AF242872.1 |
| EIAFNCCK_1 | 972583 | 974502 | tet(O/W/32/O) | ARO:3007122 | tet(O/W/32/O) | 99.69 | 100.00 | DQ525023.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| EIAFNCCK_1 | 1721847 | 1722584 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | X72021 |
| EIAFNCCK_1 | 972583 | 974502 | tet(O/W/32/O/W/O) | Doxycycline, Tetracycline, Minocycline | 99.64 | 100.00 | DQ525023 |
| EIAFNCCK_1 | 1736211 | 1737638 | fexA | Chloramphenicol, Florfenicol | 99.16 | 100.00 | AJ549214 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EIAFNCCK_1 | 1721850 | 1722584 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | EXACTX | 100.00 | 100.00 | WP_001038795.1 |
| EIAFNCCK_1 | 972583 | 974499 | tet(O/W/32/O) | tetracycline resistance ribosomal protection mosaic protein Tet(O/W/32/O) | BLASTX | 99.69 | 100.00 | WP_063856419.1 |
| EIAFNCCK_1 | 1736211 | 1737635 | fexA | chloramphenicol/florfenicol efflux MFS transporter FexA | BLASTX | 97.47 | 100.00 | WP_015585966.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| EIAFNCCK_1 | 0.0 | 1.0 | 0.0 |
| EIAFNCCK_2 | 1.0 | 0.0 | 1.0 |
| EIAFNCCK_3 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| EIAFNCCK_1 | 687890 | 716040 | False | Myoviridae | VOG4693, VOG0198, VOG1345, VOG3477, VOG0796, VOG10227, VOG0720, VOG4564, VOG4555, VOG4572, VOG4623, VOG3888, VOG1900, VOG4870, VOG5612, VOG3890, VOG3891, VOG3892, VOG3636, VOG4865, VOG4885, VOG3894, VOG4691, VOG4862, VOG10969, VOG9945, VOG4705, VOG0861, VOG5087 |
| EIAFNCCK_1 | 924202 | 948797 | False | Siphoviridae | VOG8231, VOG4869, VOG0198, VOG4841, VOG4581, VOG0686, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG10939, VOG0207, VOG4586, VOG0660, VOG4760, VOG4633, VOG4659, VOG5102 |
Phigaro v2.4.0 (Database: Jan. 2024 release)