Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 0 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LJKGGHGH_11 | 44417 | 46336 | tet(W) | ARO:3000194 | tet(W) | 100.00 | 100.00 | AJ222769.3 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LJKGGHGH_11 | 44417 | 46336 | tet(W) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | AJ427422 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LJKGGHGH_11 | 44417 | 46333 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | EXACTX | 100.00 | 100.00 | WP_002586627.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LJKGGHGH_1 | 0.0 | 1.0 | 0.0 |
| LJKGGHGH_2 | 0.0 | 1.0 | 0.0 |
| LJKGGHGH_3 | 0.0 | 1.0 | 0.0 |
| LJKGGHGH_4 | 0.0 | 1.0 | 0.0 |
| LJKGGHGH_5 | 0.0 | 1.0 | 0.0 |
| LJKGGHGH_6 | 0.0 | 1.0 | 0.0 |
| LJKGGHGH_7 | 0.0 | 1.0 | 0.0 |
| LJKGGHGH_8 | 0.0 | 1.0 | 0.0 |
| LJKGGHGH_9 | 0.0 | 1.0 | 0.0 |
| LJKGGHGH_10 | 0.0 | 1.0 | 0.0 |
| LJKGGHGH_11 | 0.0 | 1.0 | 0.0 |
| LJKGGHGH_12 | 0.0 | 1.0 | 0.0 |
| LJKGGHGH_13 | 0.0 | 1.0 | 0.0 |
| LJKGGHGH_14 | 0.0 | 1.0 | 0.0 |
| LJKGGHGH_15 | 0.0 | 1.0 | 0.0 |
| LJKGGHGH_16 | 0.0 | 1.0 | 0.0 |
| LJKGGHGH_17 | 0.0 | 1.0 | 0.0 |
| LJKGGHGH_18 | 0.0 | 1.0 | 0.0 |
| LJKGGHGH_19 | 0.0 | 1.0 | 0.0 |
| LJKGGHGH_20 | 0.0 | 1.0 | 0.0 |
| LJKGGHGH_21 | 0.0 | 1.0 | 0.0 |
| LJKGGHGH_22 | 0.0 | 1.0 | 0.0 |
| LJKGGHGH_23 | 0.0 | 1.0 | 0.0 |
| LJKGGHGH_24 | 0.0 | 1.0 | 0.0 |
| LJKGGHGH_25 | 0.0 | 1.0 | 0.0 |
| LJKGGHGH_26 | 0.0 | 1.0 | 0.0 |
| LJKGGHGH_27 | 0.0 | 1.0 | 0.0 |
| LJKGGHGH_28 | 0.0 | 1.0 | 0.0 |
| LJKGGHGH_29 | 0.0 | 1.0 | 0.0 |
| LJKGGHGH_30 | 0.0 | 1.0 | 0.0 |
| LJKGGHGH_31 | 1.0 | 0.0 | 1.0 |
| LJKGGHGH_32 | 0.0 | 1.0 | 0.0 |
| LJKGGHGH_33 | 0.0 | 1.0 | 0.0 |
| LJKGGHGH_34 | 0.0 | 1.0 | 0.0 |
| LJKGGHGH_35 | 1.0 | 0.0 | 1.0 |
| LJKGGHGH_36 | 0.0 | 1.0 | 0.0 |
| LJKGGHGH_37 | 0.0 | 1.0 | 0.0 |
| LJKGGHGH_38 | 1.0 | 0.0 | 1.0 |
| LJKGGHGH_39 | 0.0 | 1.0 | 0.0 |
| LJKGGHGH_40 | 0.0 | 1.0 | 0.0 |
| LJKGGHGH_41 | 0.0 | 1.0 | 0.0 |
| LJKGGHGH_42 | 0.0 | 1.0 | 0.0 |
| LJKGGHGH_43 | 0.0 | 1.0 | 0.0 |
| LJKGGHGH_44 | 0.0 | 1.0 | 0.0 |
| LJKGGHGH_45 | 0.0 | 1.0 | 0.0 |
| LJKGGHGH_46 | 1.0 | 0.0 | 1.0 |
| LJKGGHGH_47 | 1.0 | 0.0 | 1.0 |
| LJKGGHGH_48 | 0.0 | 1.0 | 0.0 |
| LJKGGHGH_49 | 1.0 | 0.0 | 1.0 |
| LJKGGHGH_50 | 0.0 | 1.0 | 0.0 |
| LJKGGHGH_51 | 1.0 | 0.0 | 1.0 |
| LJKGGHGH_52 | 0.0 | 1.0 | 0.0 |
| LJKGGHGH_53 | 0.0 | 1.0 | 0.0 |
| LJKGGHGH_54 | 0.0 | 1.0 | 0.0 |
| LJKGGHGH_55 | 0.0 | 1.0 | 0.0 |
| LJKGGHGH_56 | 0.0 | 1.0 | 0.0 |
| LJKGGHGH_57 | 0.0 | 1.0 | 0.0 |
| LJKGGHGH_58 | 0.0 | 1.0 | 0.0 |
| LJKGGHGH_59 | 0.0 | 1.0 | 0.0 |
| LJKGGHGH_60 | 1.0 | 0.0 | 1.0 |
| LJKGGHGH_61 | 0.0 | 1.0 | 0.0 |
| LJKGGHGH_62 | 1.0 | 0.0 | 1.0 |
| LJKGGHGH_63 | 1.0 | 0.0 | 1.0 |
| LJKGGHGH_64 | 0.0 | 1.0 | 0.0 |
| LJKGGHGH_65 | 0.0 | 1.0 | 0.0 |
| LJKGGHGH_66 | 0.0 | 1.0 | 0.0 |
| LJKGGHGH_67 | 0.0 | 1.0 | 0.0 |
| LJKGGHGH_68 | 1.0 | 0.0 | 1.0 |
| LJKGGHGH_69 | 1.0 | 0.0 | 1.0 |
| LJKGGHGH_70 | 0.0 | 1.0 | 0.0 |
| LJKGGHGH_71 | 0.0 | 1.0 | 0.0 |
| LJKGGHGH_72 | 0.0 | 1.0 | 0.0 |
| LJKGGHGH_73 | 1.0 | 0.0 | 1.0 |
| LJKGGHGH_74 | 0.0 | 1.0 | 0.0 |
| LJKGGHGH_75 | 1.0 | 0.0 | 1.0 |
| LJKGGHGH_76 | 1.0 | 0.0 | 1.0 |
| LJKGGHGH_77 | 1.0 | 0.0 | 1.0 |
| LJKGGHGH_78 | 0.0 | 1.0 | 0.0 |
| LJKGGHGH_79 | 0.0 | 1.0 | 0.0 |
| LJKGGHGH_80 | 0.0 | 1.0 | 0.0 |
| LJKGGHGH_81 | 0.0 | 1.0 | 0.0 |
| LJKGGHGH_82 | 0.0 | 1.0 | 0.0 |
| LJKGGHGH_83 | 0.0 | 1.0 | 0.0 |
| LJKGGHGH_84 | 0.0 | 1.0 | 0.0 |
| LJKGGHGH_85 | 0.0 | 1.0 | 0.0 |
| LJKGGHGH_86 | 1.0 | 0.0 | 1.0 |
| LJKGGHGH_87 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LJKGGHGH_56 | 75766 | 78682 | False | Unknown | VOG9234, |
Phigaro v2.4.0 (Database: Jan. 2024 release)