Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LINGMCLN_56 | 102771 | 101191 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LINGMCLN_1 | 0.0 | 1.0 | 0.0 |
| LINGMCLN_2 | 0.0 | 1.0 | 0.0 |
| LINGMCLN_3 | 0.0 | 1.0 | 0.0 |
| LINGMCLN_4 | 0.0 | 1.0 | 0.0 |
| LINGMCLN_5 | 0.0 | 1.0 | 0.0 |
| LINGMCLN_6 | 0.0 | 1.0 | 0.0 |
| LINGMCLN_7 | 0.0 | 1.0 | 0.0 |
| LINGMCLN_8 | 0.0 | 1.0 | 0.0 |
| LINGMCLN_9 | 0.0 | 1.0 | 0.0 |
| LINGMCLN_10 | 0.0 | 1.0 | 0.0 |
| LINGMCLN_11 | 0.0 | 1.0 | 0.0 |
| LINGMCLN_12 | 0.0 | 1.0 | 0.0 |
| LINGMCLN_13 | 0.0 | 1.0 | 0.0 |
| LINGMCLN_14 | 0.0 | 1.0 | 0.0 |
| LINGMCLN_15 | 0.0 | 1.0 | 0.0 |
| LINGMCLN_16 | 0.0 | 1.0 | 0.0 |
| LINGMCLN_17 | 0.0 | 1.0 | 0.0 |
| LINGMCLN_18 | 0.0 | 1.0 | 0.0 |
| LINGMCLN_19 | 0.0 | 1.0 | 0.0 |
| LINGMCLN_20 | 0.0 | 1.0 | 0.0 |
| LINGMCLN_21 | 0.0 | 1.0 | 0.0 |
| LINGMCLN_22 | 0.0 | 1.0 | 0.0 |
| LINGMCLN_23 | 0.0 | 1.0 | 0.0 |
| LINGMCLN_24 | 0.0 | 1.0 | 0.0 |
| LINGMCLN_25 | 0.0 | 1.0 | 0.0 |
| LINGMCLN_26 | 0.0 | 1.0 | 0.0 |
| LINGMCLN_27 | 0.0 | 1.0 | 0.0 |
| LINGMCLN_28 | 0.0 | 1.0 | 0.0 |
| LINGMCLN_29 | 0.0 | 1.0 | 0.0 |
| LINGMCLN_30 | 0.0 | 1.0 | 0.0 |
| LINGMCLN_31 | 0.0 | 1.0 | 0.0 |
| LINGMCLN_32 | 0.0 | 1.0 | 0.0 |
| LINGMCLN_33 | 0.0 | 1.0 | 0.0 |
| LINGMCLN_34 | 0.0 | 1.0 | 0.0 |
| LINGMCLN_35 | 0.0 | 1.0 | 0.0 |
| LINGMCLN_36 | 0.0 | 1.0 | 0.0 |
| LINGMCLN_37 | 1.0 | 0.0 | 1.0 |
| LINGMCLN_38 | 0.0 | 1.0 | 0.0 |
| LINGMCLN_39 | 0.0 | 1.0 | 0.0 |
| LINGMCLN_40 | 0.0 | 1.0 | 0.0 |
| LINGMCLN_41 | 0.0 | 1.0 | 0.0 |
| LINGMCLN_42 | 0.0 | 1.0 | 0.0 |
| LINGMCLN_43 | 0.0 | 1.0 | 0.0 |
| LINGMCLN_44 | 0.0 | 1.0 | 0.0 |
| LINGMCLN_45 | 0.0 | 1.0 | 0.0 |
| LINGMCLN_46 | 0.0 | 1.0 | 0.0 |
| LINGMCLN_47 | 0.0 | 1.0 | 0.0 |
| LINGMCLN_48 | 0.0 | 1.0 | 0.0 |
| LINGMCLN_49 | 0.0 | 1.0 | 0.0 |
| LINGMCLN_50 | 0.0 | 1.0 | 0.0 |
| LINGMCLN_51 | 0.0 | 1.0 | 0.0 |
| LINGMCLN_52 | 0.0 | 1.0 | 0.0 |
| LINGMCLN_53 | 0.0 | 1.0 | 0.0 |
| LINGMCLN_54 | 0.0 | 1.0 | 0.0 |
| LINGMCLN_55 | 0.0 | 1.0 | 0.0 |
| LINGMCLN_56 | 0.0 | 1.0 | 0.0 |
| LINGMCLN_57 | 0.0 | 1.0 | 0.0 |
| LINGMCLN_58 | 0.0 | 1.0 | 0.0 |
| LINGMCLN_59 | 1.0 | 0.0 | 1.0 |
| LINGMCLN_60 | 0.0 | 1.0 | 0.0 |
| LINGMCLN_61 | 0.0 | 1.0 | 0.0 |
| LINGMCLN_62 | 1.0 | 0.0 | 1.0 |
| LINGMCLN_63 | 0.0 | 1.0 | 0.0 |
| LINGMCLN_64 | 0.0 | 1.0 | 0.0 |
| LINGMCLN_65 | 0.0 | 1.0 | 0.0 |
| LINGMCLN_66 | 0.0 | 1.0 | 0.0 |
| LINGMCLN_67 | 0.0 | 1.0 | 0.0 |
| LINGMCLN_68 | 0.0 | 1.0 | 0.0 |
| LINGMCLN_69 | 0.0 | 1.0 | 0.0 |
| LINGMCLN_70 | 0.0 | 1.0 | 0.0 |
| LINGMCLN_71 | 0.0 | 1.0 | 0.0 |
| LINGMCLN_72 | 0.0 | 1.0 | 0.0 |
| LINGMCLN_73 | 1.0 | 0.0 | 1.0 |
| LINGMCLN_74 | 1.0 | 0.0 | 1.0 |
| LINGMCLN_75 | 0.0 | 1.0 | 0.0 |
| LINGMCLN_76 | 0.0 | 1.0 | 0.0 |
| LINGMCLN_77 | 0.0 | 1.0 | 0.0 |
| LINGMCLN_78 | 0.0 | 1.0 | 0.0 |
| LINGMCLN_79 | 0.0 | 1.0 | 0.0 |
| LINGMCLN_80 | 0.0 | 1.0 | 0.0 |
| LINGMCLN_81 | 1.0 | 0.0 | 1.0 |
| LINGMCLN_82 | 1.0 | 0.0 | 1.0 |
| LINGMCLN_83 | 0.0 | 1.0 | 0.0 |
| LINGMCLN_84 | 1.0 | 0.0 | 1.0 |
| LINGMCLN_85 | 1.0 | 0.0 | 1.0 |
| LINGMCLN_86 | 0.0 | 1.0 | 0.0 |
| LINGMCLN_87 | 0.0 | 1.0 | 0.0 |
| LINGMCLN_88 | 1.0 | 0.0 | 1.0 |
| LINGMCLN_89 | 0.0 | 1.0 | 0.0 |
| LINGMCLN_90 | 0.0 | 1.0 | 0.0 |
| LINGMCLN_91 | 1.0 | 0.0 | 1.0 |
| LINGMCLN_92 | 1.0 | 0.0 | 1.0 |
| LINGMCLN_93 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LINGMCLN_3 | 73216 | 81705 | False | Unknown | VOG4573, |
Phigaro v2.4.0 (Database: Jan. 2024 release)