Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GCHBDNIB_45 | 146116 | 147024 | CblA-1 | ARO:3002999 | CblA-1 | 97.97 | 102.03 | GQ343019.1 |
| GCHBDNIB_17 | 112 | 1077 | CfxA2 | ARO:3003002 | CfxA2 | 100.00 | 100.00 | AF118110.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GCHBDNIB_17 | 112 | 1077 | cfxA3 | Ampicillin | 99.90 | 100.00 | AF472622 |
| GCHBDNIB_17 | 112 | 1077 | cfxA4 | Unknown Beta-lactam | 99.90 | 100.00 | AY769933 |
| GCHBDNIB_17 | 112 | 1077 | cfxA5 | Unknown Beta-lactam | 99.90 | 100.00 | AY769934 |
| GCHBDNIB_17 | 112 | 1077 | cfxA | Cefoxitin, Ampicillin | 99.90 | 100.00 | U38243 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GCHBDNIB_17 | 112 | 1074 | cfxA | CfxA family broad-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_004339683.1 |
| GCHBDNIB_45 | 146116 | 147003 | cblA | CblA family class A beta-lactamase | BLASTX | 97.97 | 100.00 | WP_005827792.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GCHBDNIB_1 | 0.0 | 1.0 | 0.0 |
| GCHBDNIB_2 | 0.0 | 1.0 | 0.0 |
| GCHBDNIB_3 | 0.0 | 1.0 | 0.0 |
| GCHBDNIB_4 | 0.0 | 1.0 | 0.0 |
| GCHBDNIB_5 | 0.0 | 1.0 | 0.0 |
| GCHBDNIB_6 | 0.0 | 1.0 | 0.0 |
| GCHBDNIB_7 | 0.0 | 1.0 | 0.0 |
| GCHBDNIB_8 | 0.0 | 1.0 | 0.0 |
| GCHBDNIB_9 | 0.0 | 1.0 | 0.0 |
| GCHBDNIB_10 | 0.0 | 1.0 | 0.0 |
| GCHBDNIB_11 | 0.0 | 1.0 | 0.0 |
| GCHBDNIB_12 | 0.0 | 1.0 | 0.0 |
| GCHBDNIB_13 | 0.0 | 1.0 | 0.0 |
| GCHBDNIB_14 | 0.0 | 1.0 | 0.0 |
| GCHBDNIB_15 | 0.0 | 1.0 | 0.0 |
| GCHBDNIB_16 | 0.0 | 1.0 | 0.0 |
| GCHBDNIB_17 | 0.0 | 1.0 | 0.0 |
| GCHBDNIB_18 | 0.0 | 1.0 | 0.0 |
| GCHBDNIB_19 | 0.0 | 1.0 | 0.0 |
| GCHBDNIB_20 | 0.0 | 1.0 | 0.0 |
| GCHBDNIB_21 | 0.0 | 1.0 | 0.0 |
| GCHBDNIB_22 | 0.0 | 1.0 | 0.0 |
| GCHBDNIB_23 | 0.0 | 1.0 | 0.0 |
| GCHBDNIB_24 | 0.0 | 1.0 | 0.0 |
| GCHBDNIB_25 | 0.0 | 1.0 | 0.0 |
| GCHBDNIB_26 | 0.0 | 1.0 | 0.0 |
| GCHBDNIB_27 | 0.0 | 1.0 | 0.0 |
| GCHBDNIB_28 | 0.0 | 1.0 | 0.0 |
| GCHBDNIB_29 | 0.0 | 1.0 | 0.0 |
| GCHBDNIB_30 | 0.0 | 1.0 | 0.0 |
| GCHBDNIB_31 | 0.0 | 1.0 | 0.0 |
| GCHBDNIB_32 | 0.0 | 1.0 | 0.0 |
| GCHBDNIB_33 | 0.0 | 1.0 | 0.0 |
| GCHBDNIB_34 | 0.0 | 1.0 | 0.0 |
| GCHBDNIB_35 | 0.0 | 1.0 | 0.0 |
| GCHBDNIB_36 | 0.0 | 1.0 | 0.0 |
| GCHBDNIB_37 | 0.0 | 1.0 | 0.0 |
| GCHBDNIB_38 | 0.0 | 1.0 | 0.0 |
| GCHBDNIB_39 | 0.0 | 1.0 | 0.0 |
| GCHBDNIB_40 | 0.0 | 1.0 | 0.0 |
| GCHBDNIB_41 | 0.0 | 1.0 | 0.0 |
| GCHBDNIB_42 | 0.0 | 1.0 | 0.0 |
| GCHBDNIB_43 | 0.0 | 1.0 | 0.0 |
| GCHBDNIB_44 | 0.0 | 1.0 | 0.0 |
| GCHBDNIB_45 | 0.0 | 1.0 | 0.0 |
| GCHBDNIB_46 | 0.0 | 1.0 | 0.0 |
| GCHBDNIB_47 | 0.0 | 1.0 | 0.0 |
| GCHBDNIB_48 | 0.0 | 1.0 | 0.0 |
| GCHBDNIB_49 | 0.0 | 1.0 | 0.0 |
| GCHBDNIB_50 | 0.0 | 1.0 | 0.0 |
| GCHBDNIB_51 | 1.0 | 0.0 | 1.0 |
| GCHBDNIB_52 | 1.0 | 0.0 | 1.0 |
| GCHBDNIB_53 | 1.0 | 0.0 | 1.0 |
| GCHBDNIB_54 | 0.0 | 1.0 | 0.0 |
| GCHBDNIB_55 | 1.0 | 0.0 | 1.0 |
| GCHBDNIB_56 | 0.0 | 1.0 | 0.0 |
| GCHBDNIB_57 | 0.0 | 1.0 | 0.0 |
| GCHBDNIB_58 | 1.0 | 0.0 | 1.0 |
| GCHBDNIB_59 | 1.0 | 0.0 | 1.0 |
| GCHBDNIB_60 | 1.0 | 0.0 | 1.0 |
| GCHBDNIB_61 | 1.0 | 0.0 | 1.0 |
| GCHBDNIB_62 | 1.0 | 0.0 | 1.0 |
| GCHBDNIB_63 | 0.0 | 1.0 | 0.0 |
| GCHBDNIB_64 | 0.0 | 1.0 | 0.0 |
| GCHBDNIB_65 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)