Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CGLMDDOO_18 | 41765 | 42655 | CblA-1 | ARO:3002999 | CblA-1 | 96.28 | 100.00 | GQ343019.1 |
| CGLMDDOO_53 | 3229 | 5154 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CGLMDDOO_53 | 3229 | 5154 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CGLMDDOO_53 | 3229 | 5151 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| CGLMDDOO_18 | 41765 | 42652 | cblA | CblA family class A beta-lactamase | BLASTX | 96.28 | 100.00 | WP_005827792.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CGLMDDOO_1 | 0.0 | 1.0 | 0.0 |
| CGLMDDOO_2 | 0.0 | 1.0 | 0.0 |
| CGLMDDOO_3 | 0.0 | 1.0 | 0.0 |
| CGLMDDOO_4 | 0.0 | 1.0 | 0.0 |
| CGLMDDOO_5 | 0.0 | 1.0 | 0.0 |
| CGLMDDOO_6 | 0.0 | 1.0 | 0.0 |
| CGLMDDOO_7 | 0.0 | 1.0 | 0.0 |
| CGLMDDOO_8 | 0.0 | 1.0 | 0.0 |
| CGLMDDOO_9 | 0.0 | 1.0 | 0.0 |
| CGLMDDOO_10 | 0.0 | 1.0 | 0.0 |
| CGLMDDOO_11 | 0.0 | 1.0 | 0.0 |
| CGLMDDOO_12 | 0.0 | 1.0 | 0.0 |
| CGLMDDOO_13 | 0.0 | 1.0 | 0.0 |
| CGLMDDOO_14 | 0.0 | 1.0 | 0.0 |
| CGLMDDOO_15 | 0.0 | 1.0 | 0.0 |
| CGLMDDOO_16 | 0.0 | 1.0 | 0.0 |
| CGLMDDOO_17 | 0.0 | 1.0 | 0.0 |
| CGLMDDOO_18 | 0.0 | 1.0 | 0.0 |
| CGLMDDOO_19 | 0.0 | 1.0 | 0.0 |
| CGLMDDOO_20 | 0.0 | 1.0 | 0.0 |
| CGLMDDOO_21 | 0.0 | 1.0 | 0.0 |
| CGLMDDOO_22 | 0.0 | 1.0 | 0.0 |
| CGLMDDOO_23 | 0.0 | 1.0 | 0.0 |
| CGLMDDOO_24 | 0.0 | 1.0 | 0.0 |
| CGLMDDOO_25 | 0.0 | 1.0 | 0.0 |
| CGLMDDOO_26 | 0.0 | 1.0 | 0.0 |
| CGLMDDOO_27 | 0.0 | 1.0 | 0.0 |
| CGLMDDOO_28 | 0.0 | 1.0 | 0.0 |
| CGLMDDOO_29 | 0.0 | 1.0 | 0.0 |
| CGLMDDOO_30 | 0.0 | 1.0 | 0.0 |
| CGLMDDOO_31 | 0.0 | 1.0 | 0.0 |
| CGLMDDOO_32 | 0.0 | 1.0 | 0.0 |
| CGLMDDOO_33 | 0.0 | 1.0 | 0.0 |
| CGLMDDOO_34 | 0.0 | 1.0 | 0.0 |
| CGLMDDOO_35 | 0.0 | 1.0 | 0.0 |
| CGLMDDOO_36 | 0.0 | 1.0 | 0.0 |
| CGLMDDOO_37 | 0.0 | 1.0 | 0.0 |
| CGLMDDOO_38 | 0.0 | 1.0 | 0.0 |
| CGLMDDOO_39 | 0.0 | 1.0 | 0.0 |
| CGLMDDOO_40 | 0.0 | 1.0 | 0.0 |
| CGLMDDOO_41 | 0.0 | 1.0 | 0.0 |
| CGLMDDOO_42 | 0.0 | 1.0 | 0.0 |
| CGLMDDOO_43 | 0.0 | 1.0 | 0.0 |
| CGLMDDOO_44 | 0.0 | 1.0 | 0.0 |
| CGLMDDOO_45 | 0.0 | 1.0 | 0.0 |
| CGLMDDOO_46 | 0.0 | 1.0 | 0.0 |
| CGLMDDOO_47 | 0.0 | 1.0 | 0.0 |
| CGLMDDOO_48 | 0.0 | 1.0 | 0.0 |
| CGLMDDOO_49 | 0.0 | 1.0 | 0.0 |
| CGLMDDOO_50 | 0.0 | 1.0 | 0.0 |
| CGLMDDOO_51 | 0.0 | 1.0 | 0.0 |
| CGLMDDOO_52 | 0.0 | 1.0 | 0.0 |
| CGLMDDOO_53 | 0.0 | 1.0 | 0.0 |
| CGLMDDOO_54 | 0.0 | 1.0 | 0.0 |
| CGLMDDOO_55 | 0.0 | 1.0 | 0.0 |
| CGLMDDOO_56 | 0.0 | 1.0 | 0.0 |
| CGLMDDOO_57 | 0.0 | 1.0 | 0.0 |
| CGLMDDOO_58 | 1.0 | 0.0 | 1.0 |
| CGLMDDOO_59 | 0.0 | 1.0 | 0.0 |
| CGLMDDOO_60 | 0.0 | 1.0 | 0.0 |
| CGLMDDOO_61 | 0.0 | 1.0 | 0.0 |
| CGLMDDOO_62 | 0.0 | 1.0 | 0.0 |
| CGLMDDOO_63 | 0.0 | 1.0 | 0.0 |
| CGLMDDOO_64 | 1.0 | 0.0 | 1.0 |
| CGLMDDOO_65 | 0.0 | 1.0 | 0.0 |
| CGLMDDOO_66 | 1.0 | 0.0 | 1.0 |
| CGLMDDOO_67 | 0.0 | 1.0 | 0.0 |
| CGLMDDOO_68 | 0.0 | 1.0 | 0.0 |
| CGLMDDOO_69 | 0.0 | 1.0 | 0.0 |
| CGLMDDOO_70 | 0.0 | 1.0 | 0.0 |
| CGLMDDOO_71 | 0.0 | 1.0 | 0.0 |
| CGLMDDOO_72 | 0.0 | 1.0 | 0.0 |
| CGLMDDOO_73 | 1.0 | 0.0 | 1.0 |
| CGLMDDOO_74 | 0.0 | 1.0 | 0.0 |
| CGLMDDOO_75 | 0.0 | 1.0 | 0.0 |
| CGLMDDOO_76 | 1.0 | 0.0 | 1.0 |
| CGLMDDOO_77 | 1.0 | 0.0 | 1.0 |
| CGLMDDOO_78 | 0.0 | 1.0 | 0.0 |
| CGLMDDOO_79 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CGLMDDOO_5 | 19963 | 28943 | False | Unknown | VOG4573, |
Phigaro v2.4.0 (Database: Jan. 2024 release)