Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PBHPBGJA_1 | 109393 | 110097 | WalR | 3.07e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| PBHPBGJA_23 | 57448 | 57254 | CspR | 1.36e-29 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| PBHPBGJA_23 | 57448 | 57251 | CspA | 2.08e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| PBHPBGJA_21 | 1 | 936 | rep28 | 936 / 936 | 100.00 | CP005948 |
| PBHPBGJA_31 | 1 | 957 | repUS64 | 958 / 954 | 92.69 | JN601038 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PBHPBGJA_1 | 0.0 | 1.0 | 0.0 |
| PBHPBGJA_2 | 0.0 | 1.0 | 0.0 |
| PBHPBGJA_3 | 0.0 | 1.0 | 0.0 |
| PBHPBGJA_4 | 0.0 | 1.0 | 0.0 |
| PBHPBGJA_5 | 0.0 | 1.0 | 0.0 |
| PBHPBGJA_6 | 0.0 | 1.0 | 0.0 |
| PBHPBGJA_7 | 0.0 | 1.0 | 0.0 |
| PBHPBGJA_8 | 0.0 | 1.0 | 0.0 |
| PBHPBGJA_9 | 0.0 | 1.0 | 0.0 |
| PBHPBGJA_10 | 0.0 | 1.0 | 0.0 |
| PBHPBGJA_11 | 0.0 | 1.0 | 0.0 |
| PBHPBGJA_12 | 0.0 | 1.0 | 0.0 |
| PBHPBGJA_13 | 1.0 | 0.0 | 1.0 |
| PBHPBGJA_14 | 0.0 | 1.0 | 0.0 |
| PBHPBGJA_15 | 0.0 | 1.0 | 0.0 |
| PBHPBGJA_16 | 0.0 | 1.0 | 0.0 |
| PBHPBGJA_17 | 0.0 | 1.0 | 0.0 |
| PBHPBGJA_18 | 1.0 | 0.0 | 1.0 |
| PBHPBGJA_19 | 1.0 | 0.0 | 1.0 |
| PBHPBGJA_20 | 1.0 | 0.0 | 1.0 |
| PBHPBGJA_21 | 1.0 | 0.0 | 1.0 |
| PBHPBGJA_22 | 1.0 | 0.0 | 1.0 |
| PBHPBGJA_23 | 0.0 | 1.0 | 0.0 |
| PBHPBGJA_24 | 1.0 | 0.0 | 1.0 |
| PBHPBGJA_25 | 1.0 | 0.0 | 1.0 |
| PBHPBGJA_26 | 0.0 | 1.0 | 0.0 |
| PBHPBGJA_27 | 1.0 | 0.0 | 1.0 |
| PBHPBGJA_28 | 1.0 | 0.0 | 1.0 |
| PBHPBGJA_30 | 1.0 | 0.0 | 1.0 |
| PBHPBGJA_31 | 1.0 | 0.0 | 1.0 |
| PBHPBGJA_32 | 1.0 | 0.0 | 1.0 |
| PBHPBGJA_33 | 1.0 | 0.0 | 1.0 |
| PBHPBGJA_34 | 0.0 | 1.0 | 0.0 |
| PBHPBGJA_35 | 1.0 | 0.0 | 1.0 |
| PBHPBGJA_36 | 1.0 | 0.0 | 1.0 |
| PBHPBGJA_38 | 1.0 | 0.0 | 1.0 |
| PBHPBGJA_39 | 1.0 | 0.0 | 1.0 |
| PBHPBGJA_40 | 1.0 | 0.0 | 1.0 |
| PBHPBGJA_41 | 1.0 | 0.0 | 1.0 |
| PBHPBGJA_42 | 1.0 | 0.0 | 1.0 |
| PBHPBGJA_43 | 1.0 | 0.0 | 1.0 |
| PBHPBGJA_44 | 0.0 | 1.0 | 0.0 |
| PBHPBGJA_45 | 0.0 | 1.0 | 0.0 |
| PBHPBGJA_55 | 0.0 | 1.0 | 0.0 |
| PBHPBGJA_56 | 0.0 | 1.0 | 0.0 |
| PBHPBGJA_57 | 0.0 | 1.0 | 0.0 |
| PBHPBGJA_58 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PBHPBGJA_2 | 69997 | 75396 | False | Siphoviridae | VOG3549, VOG0650, VOG1302, VOG0535, VOG0283, VOG0226, VOG4566 |
| PBHPBGJA_2 | 81608 | 91400 | False | Siphoviridae | VOG0796, VOG0691, VOG0692, VOG9317, VOG4711, VOG0695, VOG0696, VOG0697, VOG6548 |
| PBHPBGJA_11 | 2307 | 31981 | False | Siphoviridae | VOG1637, VOG8438, VOG10223, VOG3462, VOG0801, VOG4910, VOG0660, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG4544, VOG4581, VOG4841, VOG8360, VOG4732, VOG0275, VOG0195, VOG4643, VOG5317, VOG5280, VOG5509, VOG0514, VOG4799, VOG0226 |
| PBHPBGJA_56 | 6327 | 26171 | False | Siphoviridae | VOG1335, VOG4545, VOG1333, VOG4634, VOG0704, VOG1330, VOG4713, VOG1887, VOG3434, VOG10914, VOG4564, VOG0720, VOG4544, VOG0796, VOG0045, VOG0198 |
Phigaro v2.4.0 (Database: Jan. 2024 release)