Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GKEJGGJM_1 | 1991284 | 1991985 | WalR | 3.27e-107 | transcriptional regulatory protein | 80.34 | 99.57 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| GKEJGGJM_6 | 1905 | 2834 | rep28 | 930 / 930 | 99.68 | CP003162 |
| GKEJGGJM_5 | 17492 | 18062 | rep38 | 576 / 903 | 89.24 | CP005943 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GKEJGGJM_1 | 0.0 | 1.0 | 0.0 |
| GKEJGGJM_2 | 1.0 | 0.0 | 1.0 |
| GKEJGGJM_3 | 1.0 | 0.0 | 1.0 |
| GKEJGGJM_4 | 1.0 | 0.0 | 1.0 |
| GKEJGGJM_5 | 1.0 | 0.0 | 1.0 |
| GKEJGGJM_6 | 1.0 | 0.0 | 1.0 |
| GKEJGGJM_7 | 1.0 | 0.0 | 1.0 |
| GKEJGGJM_8 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GKEJGGJM_1 | 383758 | 398084 | False | Siphoviridae | VOG4632, VOG4609, VOG0205, VOG4841, VOG4581, VOG4544, VOG5051, VOG4556, VOG4568, VOG0204, VOG0198, VOG8908, VOG0480 |
| GKEJGGJM_1 | 895848 | 933465 | True | Myoviridae | VOG0861, VOG4705, VOG4845, VOG4691, VOG2349, VOG0573, VOG1348, VOG1433, VOG4865, VOG6163, VOG4699, VOG1352, VOG1883, VOG1353, VOG5795, VOG1329, VOG4564, VOG0720, VOG8453, VOG7407, VOG0611, VOG5088, VOG5088, VOG5343, VOG3691, VOG0198, VOG0044, VOG5088, VOG6005, VOG4693, VOG7236, VOG0186, VOG1309 |
| GKEJGGJM_3 | 6487 | 25283 | False | Siphoviridae | VOG1352, VOG1883, VOG1353, VOG1329, VOG4555, VOG4564, VOG0720, VOG10227, VOG0796, VOG0045, VOG0198, VOG0149, VOG0052, VOG0189, VOG8647, VOG0514, VOG0226, VOG6394, VOG0283, VOG5039 |
| GKEJGGJM_3 | 31763 | 42109 | False | Myoviridae | VOG0985, VOG3349, VOG1637, VOG0703, VOG4687, VOG4845, VOG4691, VOG4550, VOG0573, VOG1348 |
| GKEJGGJM_4 | 20619 | 23297 | True | Unknown | VOG5088, VOG0221 |
Phigaro v2.4.0 (Database: Jan. 2024 release)