Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 2 | 4.47 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NKFEFDDP_20 | 6540 | 7271 | ErmA | ARO:3000347 | ErmA | 99.18 | 100.00 | X03216.1 |
| NKFEFDDP_59 | 6055 | 7482 | fexA | ARO:3002704 | fexA | 97.68 | 100.00 | AJ549214.1 |
| NKFEFDDP_20 | 5632 | 6414 | ANT(9)-Ia | ARO:3002630 | ANT(9)-Ia | 100.00 | 100.00 | X02588.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| NKFEFDDP_20 | 5632 | 6414 | ant(9)-Ia | Spectinomycin | 99.87 | 100.00 | X02588 |
| NKFEFDDP_20 | 6540 | 7271 | erm(A) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.73 | 100.00 | X03216 |
| NKFEFDDP_15 | 69 | 563 | lnu(C) | Lincomycin | 98.79 | 100.00 | AY928180 |
| NKFEFDDP_59 | 6055 | 7482 | fexA | Chloramphenicol, Florfenicol | 98.39 | 100.00 | AJ549214 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NKFEFDDP_20 | 5632 | 6411 | ant(9)-Ia | aminoglycoside nucleotidyltransferase ANT(9)-Ia | EXACTX | 100.00 | 100.00 | WP_000067268.1 |
| NKFEFDDP_20 | 6543 | 7271 | erm(A) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(A) | BLASTX | 99.18 | 100.00 | WP_001072201.1 |
| NKFEFDDP_15 | 69 | 560 | lnu(C) | lincosamide nucleotidyltransferase Lnu(C) | BLASTX | 98.17 | 100.00 | WP_063851341.1 |
| NKFEFDDP_59 | 6058 | 7482 | fexA | chloramphenicol/florfenicol efflux MFS transporter FexA | BLASTX | 97.68 | 100.00 | WP_015585966.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NKFEFDDP_9 | 20421 | 19714 | WalR | 9.42e-116 | transcriptional regulatory protein | 85.17 | 100.43 | EPH95667 |
| NKFEFDDP_14 | 22418 | 22615 | CspR | 7.34e-29 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| NKFEFDDP_14 | 22418 | 22612 | CspA | 3.58e-28 | cold shock protein | 81.54 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NKFEFDDP_1 | 0.0 | 1.0 | 0.0 |
| NKFEFDDP_2 | 0.0 | 1.0 | 0.0 |
| NKFEFDDP_3 | 0.0 | 1.0 | 0.0 |
| NKFEFDDP_4 | 1.0 | 0.0 | 1.0 |
| NKFEFDDP_5 | 0.0 | 1.0 | 0.0 |
| NKFEFDDP_6 | 0.0 | 1.0 | 0.0 |
| NKFEFDDP_7 | 0.0 | 1.0 | 0.0 |
| NKFEFDDP_8 | 1.0 | 0.0 | 1.0 |
| NKFEFDDP_9 | 0.0 | 1.0 | 0.0 |
| NKFEFDDP_10 | 0.0 | 1.0 | 0.0 |
| NKFEFDDP_11 | 0.0 | 1.0 | 0.0 |
| NKFEFDDP_12 | 1.0 | 0.0 | 1.0 |
| NKFEFDDP_13 | 0.0 | 1.0 | 0.0 |
| NKFEFDDP_14 | 0.0 | 1.0 | 0.0 |
| NKFEFDDP_15 | 1.0 | 0.0 | 1.0 |
| NKFEFDDP_16 | 0.0 | 1.0 | 0.0 |
| NKFEFDDP_17 | 1.0 | 0.0 | 1.0 |
| NKFEFDDP_18 | 1.0 | 0.0 | 1.0 |
| NKFEFDDP_19 | 0.0 | 1.0 | 0.0 |
| NKFEFDDP_20 | 0.0 | 1.0 | 0.0 |
| NKFEFDDP_21 | 0.0 | 1.0 | 0.0 |
| NKFEFDDP_22 | 0.0 | 1.0 | 0.0 |
| NKFEFDDP_23 | 0.0 | 1.0 | 0.0 |
| NKFEFDDP_24 | 0.0 | 1.0 | 0.0 |
| NKFEFDDP_25 | 0.0 | 1.0 | 0.0 |
| NKFEFDDP_26 | 0.0 | 1.0 | 0.0 |
| NKFEFDDP_27 | 0.0 | 1.0 | 0.0 |
| NKFEFDDP_28 | 0.0 | 1.0 | 0.0 |
| NKFEFDDP_29 | 0.0 | 1.0 | 0.0 |
| NKFEFDDP_30 | 1.0 | 0.0 | 1.0 |
| NKFEFDDP_31 | 0.0 | 1.0 | 0.0 |
| NKFEFDDP_32 | 0.0 | 1.0 | 0.0 |
| NKFEFDDP_33 | 0.0 | 1.0 | 0.0 |
| NKFEFDDP_34 | 1.0 | 0.0 | 1.0 |
| NKFEFDDP_35 | 0.0 | 1.0 | 0.0 |
| NKFEFDDP_36 | 0.0 | 1.0 | 0.0 |
| NKFEFDDP_37 | 0.0 | 1.0 | 0.0 |
| NKFEFDDP_38 | 1.0 | 0.0 | 1.0 |
| NKFEFDDP_39 | 0.0 | 1.0 | 0.0 |
| NKFEFDDP_40 | 1.0 | 0.0 | 1.0 |
| NKFEFDDP_41 | 0.0 | 1.0 | 0.0 |
| NKFEFDDP_42 | 0.0 | 1.0 | 0.0 |
| NKFEFDDP_43 | 1.0 | 0.0 | 1.0 |
| NKFEFDDP_44 | 0.0 | 1.0 | 0.0 |
| NKFEFDDP_45 | 0.0 | 1.0 | 0.0 |
| NKFEFDDP_46 | 0.0 | 1.0 | 0.0 |
| NKFEFDDP_47 | 1.0 | 0.0 | 1.0 |
| NKFEFDDP_48 | 1.0 | 0.0 | 1.0 |
| NKFEFDDP_49 | 1.0 | 0.0 | 1.0 |
| NKFEFDDP_50 | 1.0 | 0.0 | 1.0 |
| NKFEFDDP_51 | 0.0 | 1.0 | 0.0 |
| NKFEFDDP_52 | 0.0 | 1.0 | 0.0 |
| NKFEFDDP_53 | 0.0 | 1.0 | 0.0 |
| NKFEFDDP_54 | 0.0 | 1.0 | 0.0 |
| NKFEFDDP_55 | 0.0 | 1.0 | 0.0 |
| NKFEFDDP_56 | 0.0 | 1.0 | 0.0 |
| NKFEFDDP_57 | 1.0 | 0.0 | 1.0 |
| NKFEFDDP_58 | 0.0 | 1.0 | 0.0 |
| NKFEFDDP_59 | 1.0 | 0.0 | 1.0 |
| NKFEFDDP_60 | 0.0 | 1.0 | 0.0 |
| NKFEFDDP_61 | 0.0 | 1.0 | 0.0 |
| NKFEFDDP_62 | 0.0 | 1.0 | 0.0 |
| NKFEFDDP_63 | 0.0 | 1.0 | 0.0 |
| NKFEFDDP_64 | 0.0 | 1.0 | 0.0 |
| NKFEFDDP_65 | 1.0 | 0.0 | 1.0 |
| NKFEFDDP_66 | 0.0 | 1.0 | 0.0 |
| NKFEFDDP_67 | 0.0 | 1.0 | 0.0 |
| NKFEFDDP_68 | 1.0 | 0.0 | 1.0 |
| NKFEFDDP_69 | 0.0 | 1.0 | 0.0 |
| NKFEFDDP_70 | 1.0 | 0.0 | 1.0 |
| NKFEFDDP_71 | 0.0 | 1.0 | 0.0 |
| NKFEFDDP_72 | 0.0 | 1.0 | 0.0 |
| NKFEFDDP_73 | 0.0 | 1.0 | 0.0 |
| NKFEFDDP_74 | 1.0 | 0.0 | 1.0 |
| NKFEFDDP_75 | 1.0 | 0.0 | 1.0 |
| NKFEFDDP_76 | 0.0 | 1.0 | 0.0 |
| NKFEFDDP_77 | 0.0 | 1.0 | 0.0 |
| NKFEFDDP_78 | 1.0 | 0.0 | 1.0 |
| NKFEFDDP_79 | 0.0 | 1.0 | 0.0 |
| NKFEFDDP_80 | 0.0 | 1.0 | 0.0 |
| NKFEFDDP_81 | 0.0 | 1.0 | 0.0 |
| NKFEFDDP_82 | 0.0 | 1.0 | 0.0 |
| NKFEFDDP_83 | 0.0 | 1.0 | 0.0 |
| NKFEFDDP_84 | 1.0 | 0.0 | 1.0 |
| NKFEFDDP_85 | 0.0 | 1.0 | 0.0 |
| NKFEFDDP_86 | 0.0 | 1.0 | 0.0 |
| NKFEFDDP_88 | 0.0 | 1.0 | 0.0 |
| NKFEFDDP_89 | 0.0 | 1.0 | 0.0 |
| NKFEFDDP_90 | 1.0 | 0.0 | 1.0 |
| NKFEFDDP_91 | 0.0 | 1.0 | 0.0 |
| NKFEFDDP_92 | 0.0 | 1.0 | 0.0 |
| NKFEFDDP_93 | 0.0 | 1.0 | 0.0 |
| NKFEFDDP_94 | 1.0 | 0.0 | 1.0 |
| NKFEFDDP_95 | 0.0 | 1.0 | 0.0 |
| NKFEFDDP_96 | 1.0 | 0.0 | 1.0 |
| NKFEFDDP_97 | 0.0 | 1.0 | 0.0 |
| NKFEFDDP_98 | 1.0 | 0.0 | 1.0 |
| NKFEFDDP_99 | 1.0 | 0.0 | 1.0 |
| NKFEFDDP_100 | 1.0 | 0.0 | 1.0 |
| NKFEFDDP_101 | 0.0 | 1.0 | 0.0 |
| NKFEFDDP_102 | 1.0 | 0.0 | 1.0 |
| NKFEFDDP_103 | 0.0 | 1.0 | 0.0 |
| NKFEFDDP_104 | 1.0 | 0.0 | 1.0 |
| NKFEFDDP_105 | 0.0 | 1.0 | 0.0 |
| NKFEFDDP_106 | 1.0 | 0.0 | 1.0 |
| NKFEFDDP_107 | 1.0 | 0.0 | 1.0 |
| NKFEFDDP_108 | 1.0 | 0.0 | 1.0 |
| NKFEFDDP_109 | 1.0 | 0.0 | 1.0 |
| NKFEFDDP_110 | 1.0 | 0.0 | 1.0 |
| NKFEFDDP_111 | 0.0 | 1.0 | 0.0 |
| NKFEFDDP_112 | 1.0 | 0.0 | 1.0 |
| NKFEFDDP_113 | 1.0 | 0.0 | 1.0 |
| NKFEFDDP_114 | 1.0 | 0.0 | 1.0 |
| NKFEFDDP_115 | 0.0 | 1.0 | 0.0 |
| NKFEFDDP_116 | 1.0 | 0.0 | 1.0 |
| NKFEFDDP_117 | 1.0 | 0.0 | 1.0 |
| NKFEFDDP_118 | 1.0 | 0.0 | 1.0 |
| NKFEFDDP_120 | 1.0 | 0.0 | 1.0 |
| NKFEFDDP_122 | 1.0 | 0.0 | 1.0 |
| NKFEFDDP_123 | 1.0 | 0.0 | 1.0 |
| NKFEFDDP_124 | 1.0 | 0.0 | 1.0 |
| NKFEFDDP_125 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NKFEFDDP_23 | 5141 | 22549 | False | Siphoviridae | VOG3749, VOG4555, VOG1329, VOG4713, VOG0704, VOG0799, VOG0725, VOG0817, VOG6163, VOG0801, VOG3462, VOG6116, VOG4856, VOG5008 |
| NKFEFDDP_43 | 6799 | 13437 | False | Siphoviridae | VOG0535, VOG6212, VOG0322, VOG6545, VOG0514, VOG11003, VOG4566, VOG0025 |
Phigaro v2.4.0 (Database: Jan. 2024 release)