Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 2 | 3.61 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NJFOHCPL_20 | 28986 | 29768 | ANT(9)-Ia | ARO:3002630 | ANT(9)-Ia | 100.00 | 100.00 | X02588.1 |
| NJFOHCPL_20 | 28129 | 28860 | ErmA | ARO:3000347 | ErmA | 99.18 | 100.00 | X03216.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| NJFOHCPL_20 | 28986 | 29768 | ant(9)-Ia | Spectinomycin | 99.87 | 100.00 | X02588 |
| NJFOHCPL_20 | 28129 | 28860 | erm(A) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.73 | 100.00 | X03216 |
| NJFOHCPL_15 | 46048 | 46542 | lnu(C) | Lincomycin | 98.79 | 100.00 | AY928180 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NJFOHCPL_20 | 28989 | 29768 | ant(9)-Ia | aminoglycoside nucleotidyltransferase ANT(9)-Ia | EXACTX | 100.00 | 100.00 | WP_000067268.1 |
| NJFOHCPL_20 | 28129 | 28857 | erm(A) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(A) | BLASTX | 99.18 | 100.00 | WP_001072201.1 |
| NJFOHCPL_15 | 46051 | 46542 | lnu(C) | lincosamide nucleotidyltransferase Lnu(C) | BLASTX | 98.17 | 100.00 | WP_063851341.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NJFOHCPL_9 | 33223 | 33930 | WalR | 9.42e-116 | transcriptional regulatory protein | 85.17 | 100.43 | EPH95667 |
| NJFOHCPL_17 | 12696 | 12893 | CspR | 5.89e-29 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| NJFOHCPL_17 | 12696 | 12890 | CspA | 2.87e-28 | cold shock protein | 81.54 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NJFOHCPL_1 | 0.0 | 1.0 | 0.0 |
| NJFOHCPL_2 | 0.0 | 1.0 | 0.0 |
| NJFOHCPL_3 | 0.0 | 1.0 | 0.0 |
| NJFOHCPL_4 | 1.0 | 0.0 | 1.0 |
| NJFOHCPL_5 | 0.0 | 1.0 | 0.0 |
| NJFOHCPL_6 | 0.0 | 1.0 | 0.0 |
| NJFOHCPL_7 | 0.0 | 1.0 | 0.0 |
| NJFOHCPL_8 | 1.0 | 0.0 | 1.0 |
| NJFOHCPL_9 | 0.0 | 1.0 | 0.0 |
| NJFOHCPL_10 | 0.0 | 1.0 | 0.0 |
| NJFOHCPL_11 | 0.0 | 1.0 | 0.0 |
| NJFOHCPL_12 | 0.0 | 1.0 | 0.0 |
| NJFOHCPL_13 | 1.0 | 0.0 | 1.0 |
| NJFOHCPL_14 | 0.0 | 1.0 | 0.0 |
| NJFOHCPL_15 | 1.0 | 0.0 | 1.0 |
| NJFOHCPL_16 | 0.0 | 1.0 | 0.0 |
| NJFOHCPL_17 | 0.0 | 1.0 | 0.0 |
| NJFOHCPL_18 | 1.0 | 0.0 | 1.0 |
| NJFOHCPL_19 | 0.0 | 1.0 | 0.0 |
| NJFOHCPL_20 | 0.0 | 1.0 | 0.0 |
| NJFOHCPL_21 | 0.0 | 1.0 | 0.0 |
| NJFOHCPL_22 | 0.0 | 1.0 | 0.0 |
| NJFOHCPL_23 | 0.0 | 1.0 | 0.0 |
| NJFOHCPL_24 | 0.0 | 1.0 | 0.0 |
| NJFOHCPL_25 | 0.0 | 1.0 | 0.0 |
| NJFOHCPL_26 | 0.0 | 1.0 | 0.0 |
| NJFOHCPL_27 | 0.0 | 1.0 | 0.0 |
| NJFOHCPL_28 | 0.0 | 1.0 | 0.0 |
| NJFOHCPL_29 | 0.0 | 1.0 | 0.0 |
| NJFOHCPL_30 | 1.0 | 0.0 | 1.0 |
| NJFOHCPL_31 | 0.0 | 1.0 | 0.0 |
| NJFOHCPL_32 | 1.0 | 0.0 | 1.0 |
| NJFOHCPL_33 | 0.0 | 1.0 | 0.0 |
| NJFOHCPL_34 | 0.0 | 1.0 | 0.0 |
| NJFOHCPL_35 | 0.0 | 1.0 | 0.0 |
| NJFOHCPL_36 | 0.0 | 1.0 | 0.0 |
| NJFOHCPL_37 | 0.0 | 1.0 | 0.0 |
| NJFOHCPL_38 | 0.0 | 1.0 | 0.0 |
| NJFOHCPL_39 | 0.0 | 1.0 | 0.0 |
| NJFOHCPL_40 | 0.0 | 1.0 | 0.0 |
| NJFOHCPL_41 | 0.0 | 1.0 | 0.0 |
| NJFOHCPL_42 | 0.0 | 1.0 | 0.0 |
| NJFOHCPL_43 | 1.0 | 0.0 | 1.0 |
| NJFOHCPL_44 | 1.0 | 0.0 | 1.0 |
| NJFOHCPL_45 | 1.0 | 0.0 | 1.0 |
| NJFOHCPL_46 | 1.0 | 0.0 | 1.0 |
| NJFOHCPL_47 | 0.0 | 1.0 | 0.0 |
| NJFOHCPL_48 | 0.0 | 1.0 | 0.0 |
| NJFOHCPL_49 | 0.0 | 1.0 | 0.0 |
| NJFOHCPL_50 | 0.0 | 1.0 | 0.0 |
| NJFOHCPL_51 | 0.0 | 1.0 | 0.0 |
| NJFOHCPL_52 | 0.0 | 1.0 | 0.0 |
| NJFOHCPL_53 | 1.0 | 0.0 | 1.0 |
| NJFOHCPL_54 | 0.0 | 1.0 | 0.0 |
| NJFOHCPL_55 | 0.0 | 1.0 | 0.0 |
| NJFOHCPL_56 | 0.0 | 1.0 | 0.0 |
| NJFOHCPL_57 | 0.0 | 1.0 | 0.0 |
| NJFOHCPL_58 | 0.0 | 1.0 | 0.0 |
| NJFOHCPL_59 | 0.0 | 1.0 | 0.0 |
| NJFOHCPL_60 | 0.0 | 1.0 | 0.0 |
| NJFOHCPL_61 | 0.0 | 1.0 | 0.0 |
| NJFOHCPL_62 | 0.0 | 1.0 | 0.0 |
| NJFOHCPL_63 | 0.0 | 1.0 | 0.0 |
| NJFOHCPL_64 | 0.0 | 1.0 | 0.0 |
| NJFOHCPL_65 | 0.0 | 1.0 | 0.0 |
| NJFOHCPL_66 | 1.0 | 0.0 | 1.0 |
| NJFOHCPL_67 | 0.0 | 1.0 | 0.0 |
| NJFOHCPL_68 | 0.0 | 1.0 | 0.0 |
| NJFOHCPL_69 | 0.0 | 1.0 | 0.0 |
| NJFOHCPL_70 | 0.0 | 1.0 | 0.0 |
| NJFOHCPL_71 | 1.0 | 0.0 | 1.0 |
| NJFOHCPL_72 | 1.0 | 0.0 | 1.0 |
| NJFOHCPL_73 | 0.0 | 1.0 | 0.0 |
| NJFOHCPL_74 | 0.0 | 1.0 | 0.0 |
| NJFOHCPL_75 | 0.0 | 1.0 | 0.0 |
| NJFOHCPL_76 | 0.0 | 1.0 | 0.0 |
| NJFOHCPL_77 | 0.0 | 1.0 | 0.0 |
| NJFOHCPL_78 | 0.0 | 1.0 | 0.0 |
| NJFOHCPL_80 | 0.0 | 1.0 | 0.0 |
| NJFOHCPL_81 | 1.0 | 0.0 | 1.0 |
| NJFOHCPL_82 | 0.0 | 1.0 | 0.0 |
| NJFOHCPL_83 | 0.0 | 1.0 | 0.0 |
| NJFOHCPL_84 | 0.0 | 1.0 | 0.0 |
| NJFOHCPL_85 | 0.0 | 1.0 | 0.0 |
| NJFOHCPL_86 | 1.0 | 0.0 | 1.0 |
| NJFOHCPL_87 | 0.0 | 1.0 | 0.0 |
| NJFOHCPL_88 | 0.0 | 1.0 | 0.0 |
| NJFOHCPL_89 | 1.0 | 0.0 | 1.0 |
| NJFOHCPL_90 | 1.0 | 0.0 | 1.0 |
| NJFOHCPL_91 | 1.0 | 0.0 | 1.0 |
| NJFOHCPL_92 | 0.0 | 1.0 | 0.0 |
| NJFOHCPL_93 | 1.0 | 0.0 | 1.0 |
| NJFOHCPL_94 | 0.0 | 1.0 | 0.0 |
| NJFOHCPL_95 | 1.0 | 0.0 | 1.0 |
| NJFOHCPL_96 | 1.0 | 0.0 | 1.0 |
| NJFOHCPL_97 | 0.0 | 1.0 | 0.0 |
| NJFOHCPL_98 | 1.0 | 0.0 | 1.0 |
| NJFOHCPL_99 | 0.0 | 1.0 | 0.0 |
| NJFOHCPL_100 | 1.0 | 0.0 | 1.0 |
| NJFOHCPL_101 | 1.0 | 0.0 | 1.0 |
| NJFOHCPL_102 | 1.0 | 0.0 | 1.0 |
| NJFOHCPL_103 | 1.0 | 0.0 | 1.0 |
| NJFOHCPL_104 | 0.0 | 1.0 | 0.0 |
| NJFOHCPL_105 | 0.0 | 1.0 | 0.0 |
| NJFOHCPL_106 | 1.0 | 0.0 | 1.0 |
| NJFOHCPL_107 | 1.0 | 0.0 | 1.0 |
| NJFOHCPL_108 | 1.0 | 0.0 | 1.0 |
| NJFOHCPL_109 | 1.0 | 0.0 | 1.0 |
| NJFOHCPL_111 | 1.0 | 0.0 | 1.0 |
| NJFOHCPL_112 | 1.0 | 0.0 | 1.0 |
| NJFOHCPL_113 | 1.0 | 0.0 | 1.0 |
| NJFOHCPL_114 | 1.0 | 0.0 | 1.0 |
| NJFOHCPL_115 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NJFOHCPL_14 | 6810 | 20225 | False | Siphoviridae | VOG9667, VOG0025, VOG4566, VOG11003, VOG0514, VOG6545, VOG0322, VOG6212, VOG0535, VOG5744, VOG7236, VOG1563, VOG8520, VOG4602, VOG0682, VOG0221, VOG11003 |
| NJFOHCPL_23 | 5141 | 22549 | False | Siphoviridae | VOG3749, VOG4555, VOG1329, VOG4713, VOG0704, VOG0799, VOG0725, VOG0817, VOG6163, VOG0801, VOG3462, VOG6116, VOG4856, VOG5008 |
Phigaro v2.4.0 (Database: Jan. 2024 release)