Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MDEKJNPC_3 | 71538 | 72428 | CblA-1 | ARO:3002999 | CblA-1 | 100.00 | 100.00 | GQ343019.1 |
| MDEKJNPC_38 | 4316 | 6241 | tet(Q) | ARO:3000191 | tet(Q) | 98.75 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| MDEKJNPC_38 | 4316 | 6241 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.01 | 100.00 | Z21523 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MDEKJNPC_3 | 71541 | 72428 | cblA | CblA family class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005827792.1 |
| MDEKJNPC_38 | 4319 | 6241 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 98.75 | 100.00 | WP_002560998.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| MDEKJNPC_70 | 1464 | 2143 | repUS2 | 682 / 681 | 98.53 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| MDEKJNPC_1 | 0.0 | 1.0 | 0.0 |
| MDEKJNPC_2 | 0.0 | 1.0 | 0.0 |
| MDEKJNPC_3 | 0.0 | 1.0 | 0.0 |
| MDEKJNPC_4 | 0.0 | 1.0 | 0.0 |
| MDEKJNPC_5 | 0.0 | 1.0 | 0.0 |
| MDEKJNPC_6 | 0.0 | 1.0 | 0.0 |
| MDEKJNPC_7 | 0.0 | 1.0 | 0.0 |
| MDEKJNPC_8 | 0.0 | 1.0 | 0.0 |
| MDEKJNPC_9 | 0.0 | 1.0 | 0.0 |
| MDEKJNPC_10 | 0.0 | 1.0 | 0.0 |
| MDEKJNPC_11 | 0.0 | 1.0 | 0.0 |
| MDEKJNPC_12 | 0.0 | 1.0 | 0.0 |
| MDEKJNPC_13 | 0.0 | 1.0 | 0.0 |
| MDEKJNPC_14 | 0.0 | 1.0 | 0.0 |
| MDEKJNPC_15 | 0.0 | 1.0 | 0.0 |
| MDEKJNPC_16 | 0.0 | 1.0 | 0.0 |
| MDEKJNPC_17 | 0.0 | 1.0 | 0.0 |
| MDEKJNPC_18 | 0.0 | 1.0 | 0.0 |
| MDEKJNPC_19 | 0.0 | 1.0 | 0.0 |
| MDEKJNPC_20 | 0.0 | 1.0 | 0.0 |
| MDEKJNPC_21 | 0.0 | 1.0 | 0.0 |
| MDEKJNPC_22 | 0.0 | 1.0 | 0.0 |
| MDEKJNPC_23 | 0.0 | 1.0 | 0.0 |
| MDEKJNPC_24 | 0.0 | 1.0 | 0.0 |
| MDEKJNPC_25 | 0.0 | 1.0 | 0.0 |
| MDEKJNPC_26 | 0.0 | 1.0 | 0.0 |
| MDEKJNPC_27 | 0.0 | 1.0 | 0.0 |
| MDEKJNPC_28 | 0.0 | 1.0 | 0.0 |
| MDEKJNPC_29 | 0.0 | 1.0 | 0.0 |
| MDEKJNPC_30 | 0.0 | 1.0 | 0.0 |
| MDEKJNPC_31 | 0.0 | 1.0 | 0.0 |
| MDEKJNPC_32 | 0.0 | 1.0 | 0.0 |
| MDEKJNPC_33 | 0.0 | 1.0 | 0.0 |
| MDEKJNPC_34 | 0.0 | 1.0 | 0.0 |
| MDEKJNPC_35 | 0.0 | 1.0 | 0.0 |
| MDEKJNPC_36 | 0.0 | 1.0 | 0.0 |
| MDEKJNPC_37 | 0.0 | 1.0 | 0.0 |
| MDEKJNPC_38 | 0.0 | 1.0 | 0.0 |
| MDEKJNPC_39 | 1.0 | 0.0 | 1.0 |
| MDEKJNPC_40 | 0.0 | 1.0 | 0.0 |
| MDEKJNPC_41 | 0.0 | 1.0 | 0.0 |
| MDEKJNPC_42 | 0.0 | 1.0 | 0.0 |
| MDEKJNPC_43 | 0.0 | 1.0 | 0.0 |
| MDEKJNPC_44 | 0.0 | 1.0 | 0.0 |
| MDEKJNPC_45 | 1.0 | 0.0 | 1.0 |
| MDEKJNPC_46 | 0.0 | 1.0 | 0.0 |
| MDEKJNPC_47 | 0.0 | 1.0 | 0.0 |
| MDEKJNPC_48 | 0.0 | 1.0 | 0.0 |
| MDEKJNPC_49 | 0.0 | 1.0 | 0.0 |
| MDEKJNPC_50 | 0.0 | 1.0 | 0.0 |
| MDEKJNPC_51 | 1.0 | 0.0 | 1.0 |
| MDEKJNPC_52 | 1.0 | 0.0 | 1.0 |
| MDEKJNPC_53 | 1.0 | 0.0 | 1.0 |
| MDEKJNPC_54 | 1.0 | 0.0 | 1.0 |
| MDEKJNPC_55 | 0.0 | 1.0 | 0.0 |
| MDEKJNPC_56 | 0.0 | 1.0 | 0.0 |
| MDEKJNPC_57 | 1.0 | 0.0 | 1.0 |
| MDEKJNPC_58 | 1.0 | 0.0 | 1.0 |
| MDEKJNPC_60 | 1.0 | 0.0 | 1.0 |
| MDEKJNPC_61 | 1.0 | 0.0 | 1.0 |
| MDEKJNPC_62 | 0.0 | 1.0 | 0.0 |
| MDEKJNPC_63 | 1.0 | 0.0 | 1.0 |
| MDEKJNPC_64 | 0.0 | 1.0 | 0.0 |
| MDEKJNPC_65 | 0.0 | 1.0 | 0.0 |
| MDEKJNPC_66 | 0.0 | 1.0 | 0.0 |
| MDEKJNPC_67 | 1.0 | 0.0 | 1.0 |
| MDEKJNPC_68 | 0.0 | 1.0 | 0.0 |
| MDEKJNPC_69 | 1.0 | 0.0 | 1.0 |
| MDEKJNPC_70 | 1.0 | 0.0 | 1.0 |
| MDEKJNPC_71 | 1.0 | 0.0 | 1.0 |
| MDEKJNPC_72 | 1.0 | 0.0 | 1.0 |
| MDEKJNPC_73 | 1.0 | 0.0 | 1.0 |
| MDEKJNPC_74 | 1.0 | 0.0 | 1.0 |
| MDEKJNPC_75 | 1.0 | 0.0 | 1.0 |
| MDEKJNPC_76 | 1.0 | 0.0 | 1.0 |
| MDEKJNPC_77 | 0.0 | 1.0 | 0.0 |
| MDEKJNPC_78 | 1.0 | 0.0 | 1.0 |
| MDEKJNPC_79 | 1.0 | 0.0 | 1.0 |
| MDEKJNPC_80 | 1.0 | 0.0 | 1.0 |
| MDEKJNPC_83 | 0.0 | 1.0 | 0.0 |
| MDEKJNPC_84 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)