Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GLFINPHP_1 | 32063 | 32764 | WalR | 3.25e-107 | transcriptional regulatory protein | 80.34 | 99.57 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| GLFINPHP_3 | 1303 | 2232 | rep28 | 930 / 930 | 98.49 | CP003162 |
| GLFINPHP_4 | 22910 | 23977 | repUS73 | 1068 / 1101 | 95.79 | CP002654 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GLFINPHP_1 | 0.0 | 1.0 | 0.0 |
| GLFINPHP_2 | 1.0 | 0.0 | 1.0 |
| GLFINPHP_3 | 1.0 | 0.0 | 1.0 |
| GLFINPHP_4 | 1.0 | 0.0 | 1.0 |
| GLFINPHP_5 | 1.0 | 0.0 | 1.0 |
| GLFINPHP_6 | 1.0 | 0.0 | 1.0 |
| GLFINPHP_7 | 1.0 | 0.0 | 1.0 |
| GLFINPHP_8 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GLFINPHP_1 | 784546 | 798432 | False | Siphoviridae | VOG4606, VOG0205, VOG4841, VOG4581, VOG4544, VOG4556, VOG4568, VOG0204, VOG0198, VOG8908, VOG0480 |
| GLFINPHP_1 | 1293555 | 1327050 | False | Myoviridae | VOG0861, VOG7896, VOG4845, VOG4691, VOG4550, VOG0573, VOG1348, VOG1433, VOG1956, VOG6163, VOG4699, VOG1352, VOG1883, VOG1881, VOG1353, VOG4778, VOG1942, VOG2779, VOG1915, VOG4865, VOG4564, VOG1912, VOG10227, VOG0796, VOG0198, VOG4010, VOG5088, VOG0044, VOG6005, VOG4693, VOG7236, VOG4855, VOG0186, VOG0186, VOG1309 |
| GLFINPHP_1 | 1385557 | 1422105 | False | Siphoviridae | VOG0703, VOG4705, VOG6000, VOG9955, VOG10972, VOG4599, VOG4605, VOG4910, VOG0660, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG1886, VOG4581, VOG4841, VOG4214, VOG4673, VOG0536, VOG5545, VOG0044, VOG5821, VOG4559, VOG0025, VOG4566, VOG1936, VOG0685, VOG11003, VOG0181, VOG0513 |
Phigaro v2.4.0 (Database: Jan. 2024 release)