Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LAIEPBCN_1 | 2125742 | 2126446 | WalR | 2.25e-111 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LAIEPBCN_1 | 0.0 | 1.0 | 0.0 |
| LAIEPBCN_2 | 1.0 | 0.0 | 1.0 |
| LAIEPBCN_3 | 1.0 | 0.0 | 1.0 |
| LAIEPBCN_4 | 1.0 | 0.0 | 1.0 |
| LAIEPBCN_5 | 1.0 | 0.0 | 1.0 |
| LAIEPBCN_6 | 1.0 | 0.0 | 1.0 |
| LAIEPBCN_7 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LAIEPBCN_1 | 3151 | 33820 | False | Siphoviridae | VOG2820, VOG3643, VOG1183, VOG0044, VOG3307, VOG0198, VOG4570, VOG10904, VOG4549, VOG0531, VOG4841, VOG4581, VOG4544, VOG3644, VOG4556, VOG4568, VOG4553, VOG5601, VOG0204, VOG4589, VOG0539, VOG0704, VOG4586, VOG2225, VOG6163, VOG4605, VOG4599, VOG6455, VOG7896, VOG0861, VOG7017, VOG0703, VOG4918 |
| LAIEPBCN_1 | 370268 | 397127 | False | Siphoviridae | VOG0274, VOG0221, VOG4581, VOG1886, VOG4556, VOG4568, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG6163, VOG4605, VOG4605, VOG4599, VOG6455, VOG7896, VOG0753, VOG0703, VOG8294, VOG6495, VOG0275 |
| LAIEPBCN_1 | 775398 | 811448 | False | Siphoviridae | VOG4605, VOG8294, VOG0054, VOG7888, VOG7896, VOG6455, VOG4599, VOG4605, VOG4545, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG1329, VOG4555, VOG4564, VOG0720, VOG4544, VOG0796, VOG4570, VOG3691, VOG0198, VOG0044, VOG3643, VOG4567, VOG3643, VOG0152, VOG9741, VOG0536, VOG9860, VOG0189, VOG4566, VOG0186, VOG1309, VOG8241 |
| LAIEPBCN_1 | 907075 | 915181 | False | Siphoviridae | VOG4568, VOG4556, VOG5051, VOG4544, VOG4581, VOG4841, VOG0205 |
| LAIEPBCN_1 | 1446529 | 1462533 | True | Siphoviridae | VOG5532, VOG4549, VOG4570, VOG4570, VOG5088, VOG5088, VOG0198, VOG5088, VOG3307, VOG5317, VOG5280, VOG0982, VOG0189, VOG4799, VOG10867, VOG0181, VOG10059 |
| LAIEPBCN_1 | 3070715 | 3077178 | False | Siphoviridae | VOG6495, VOG4552, VOG0181, VOG10867, VOG4967, VOG3642, VOG0321, VOG10904, VOG0322 |
Phigaro v2.4.0 (Database: Jan. 2024 release)