Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IGCGABHK_21 | 72699 | 73499 | ErmF | ARO:3000498 | ErmF | 97.37 | 100.00 | M17124.1 |
| IGCGABHK_21 | 71254 | 72393 | tet(X1) | ARO:3005166 | tet(X1) | 99.72 | 105.57 | AJ311171.1 |
| IGCGABHK_21 | 69919 | 71055 | tet(X) | ARO:3000205 | tet(X) | 99.47 | 97.42 | M37699.1 |
| IGCGABHK_21 | 68880 | 69743 | aadS | ARO:3004683 | aadS | 100.00 | 100.00 | M72415.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| IGCGABHK_21 | 69919 | 71085 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.83 | 100.00 | M37699 |
| IGCGABHK_21 | 72699 | 73499 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.75 | 100.00 | M62487 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IGCGABHK_21 | 68883 | 69743 | aadS | aminoglycoside 6-adenylyltransferase AadS | EXACTX | 100.00 | 100.00 | WP_003013318.1 |
| IGCGABHK_21 | 69922 | 71085 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | EXACTX | 100.00 | 100.00 | WP_008651082.1 |
| IGCGABHK_21 | 71257 | 72393 | tet(X1) | tetracycline-inactivating monooxygenase Tet(X1) | BLASTX | 99.74 | 100.00 | WP_204376222.1 |
| IGCGABHK_21 | 72699 | 73496 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 99.25 | 100.00 | WP_063844771.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| IGCGABHK_73 | 1311 | 1990 | repUS2 | 682 / 681 | 98.53 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| IGCGABHK_1 | 0.0 | 1.0 | 0.0 |
| IGCGABHK_2 | 0.0 | 1.0 | 0.0 |
| IGCGABHK_3 | 0.0 | 1.0 | 0.0 |
| IGCGABHK_4 | 0.0 | 1.0 | 0.0 |
| IGCGABHK_5 | 0.0 | 1.0 | 0.0 |
| IGCGABHK_6 | 0.0 | 1.0 | 0.0 |
| IGCGABHK_7 | 0.0 | 1.0 | 0.0 |
| IGCGABHK_8 | 0.0 | 1.0 | 0.0 |
| IGCGABHK_9 | 0.0 | 1.0 | 0.0 |
| IGCGABHK_10 | 0.0 | 1.0 | 0.0 |
| IGCGABHK_11 | 0.0 | 1.0 | 0.0 |
| IGCGABHK_12 | 0.0 | 1.0 | 0.0 |
| IGCGABHK_13 | 0.0 | 1.0 | 0.0 |
| IGCGABHK_14 | 0.0 | 1.0 | 0.0 |
| IGCGABHK_15 | 0.0 | 1.0 | 0.0 |
| IGCGABHK_16 | 0.0 | 1.0 | 0.0 |
| IGCGABHK_17 | 0.0 | 1.0 | 0.0 |
| IGCGABHK_18 | 0.0 | 1.0 | 0.0 |
| IGCGABHK_19 | 1.0 | 0.0 | 1.0 |
| IGCGABHK_20 | 0.0 | 1.0 | 0.0 |
| IGCGABHK_21 | 0.0 | 1.0 | 0.0 |
| IGCGABHK_22 | 0.0 | 1.0 | 0.0 |
| IGCGABHK_23 | 0.0 | 1.0 | 0.0 |
| IGCGABHK_24 | 0.0 | 1.0 | 0.0 |
| IGCGABHK_25 | 0.0 | 1.0 | 0.0 |
| IGCGABHK_26 | 0.0 | 1.0 | 0.0 |
| IGCGABHK_27 | 0.0 | 1.0 | 0.0 |
| IGCGABHK_28 | 0.0 | 1.0 | 0.0 |
| IGCGABHK_29 | 0.0 | 1.0 | 0.0 |
| IGCGABHK_30 | 0.0 | 1.0 | 0.0 |
| IGCGABHK_31 | 0.0 | 1.0 | 0.0 |
| IGCGABHK_32 | 0.0 | 1.0 | 0.0 |
| IGCGABHK_33 | 0.0 | 1.0 | 0.0 |
| IGCGABHK_34 | 0.0 | 1.0 | 0.0 |
| IGCGABHK_35 | 0.0 | 1.0 | 0.0 |
| IGCGABHK_36 | 0.0 | 1.0 | 0.0 |
| IGCGABHK_37 | 0.0 | 1.0 | 0.0 |
| IGCGABHK_38 | 0.0 | 1.0 | 0.0 |
| IGCGABHK_39 | 0.0 | 1.0 | 0.0 |
| IGCGABHK_40 | 1.0 | 0.0 | 1.0 |
| IGCGABHK_41 | 0.0 | 1.0 | 0.0 |
| IGCGABHK_42 | 0.0 | 1.0 | 0.0 |
| IGCGABHK_43 | 0.0 | 1.0 | 0.0 |
| IGCGABHK_44 | 0.0 | 1.0 | 0.0 |
| IGCGABHK_45 | 0.0 | 1.0 | 0.0 |
| IGCGABHK_46 | 0.0 | 1.0 | 0.0 |
| IGCGABHK_47 | 0.0 | 1.0 | 0.0 |
| IGCGABHK_48 | 0.0 | 1.0 | 0.0 |
| IGCGABHK_49 | 0.0 | 1.0 | 0.0 |
| IGCGABHK_50 | 0.0 | 1.0 | 0.0 |
| IGCGABHK_51 | 0.0 | 1.0 | 0.0 |
| IGCGABHK_52 | 0.0 | 1.0 | 0.0 |
| IGCGABHK_53 | 0.0 | 1.0 | 0.0 |
| IGCGABHK_54 | 1.0 | 0.0 | 1.0 |
| IGCGABHK_55 | 0.0 | 1.0 | 0.0 |
| IGCGABHK_56 | 0.0 | 1.0 | 0.0 |
| IGCGABHK_57 | 1.0 | 0.0 | 1.0 |
| IGCGABHK_58 | 0.0 | 1.0 | 0.0 |
| IGCGABHK_59 | 0.0 | 1.0 | 0.0 |
| IGCGABHK_60 | 1.0 | 0.0 | 1.0 |
| IGCGABHK_61 | 1.0 | 0.0 | 1.0 |
| IGCGABHK_63 | 0.0 | 1.0 | 0.0 |
| IGCGABHK_64 | 1.0 | 0.0 | 1.0 |
| IGCGABHK_65 | 1.0 | 0.0 | 1.0 |
| IGCGABHK_66 | 0.0 | 1.0 | 0.0 |
| IGCGABHK_67 | 1.0 | 0.0 | 1.0 |
| IGCGABHK_68 | 1.0 | 0.0 | 1.0 |
| IGCGABHK_69 | 0.0 | 1.0 | 0.0 |
| IGCGABHK_70 | 0.0 | 1.0 | 0.0 |
| IGCGABHK_71 | 1.0 | 0.0 | 1.0 |
| IGCGABHK_72 | 1.0 | 0.0 | 1.0 |
| IGCGABHK_73 | 1.0 | 0.0 | 1.0 |
| IGCGABHK_74 | 0.0 | 1.0 | 0.0 |
| IGCGABHK_75 | 1.0 | 0.0 | 1.0 |
| IGCGABHK_76 | 0.0 | 1.0 | 0.0 |
| IGCGABHK_77 | 0.0 | 1.0 | 0.0 |
| IGCGABHK_78 | 0.0 | 1.0 | 0.0 |
| IGCGABHK_79 | 0.0 | 1.0 | 0.0 |
| IGCGABHK_80 | 0.0 | 1.0 | 0.0 |
| IGCGABHK_81 | 0.0 | 1.0 | 0.0 |
| IGCGABHK_82 | 0.0 | 1.0 | 0.0 |
| IGCGABHK_83 | 0.0 | 1.0 | 0.0 |
| IGCGABHK_84 | 0.0 | 1.0 | 0.0 |
| IGCGABHK_85 | 1.0 | 0.0 | 1.0 |
| IGCGABHK_86 | 1.0 | 0.0 | 1.0 |
| IGCGABHK_87 | 0.0 | 1.0 | 0.0 |
| IGCGABHK_88 | 0.0 | 1.0 | 0.0 |
| IGCGABHK_89 | 1.0 | 0.0 | 1.0 |
| IGCGABHK_90 | 1.0 | 0.0 | 1.0 |
| IGCGABHK_91 | 1.0 | 0.0 | 1.0 |
| IGCGABHK_92 | 1.0 | 0.0 | 1.0 |
| IGCGABHK_93 | 1.0 | 0.0 | 1.0 |
| IGCGABHK_94 | 1.0 | 0.0 | 1.0 |
| IGCGABHK_95 | 1.0 | 0.0 | 1.0 |
| IGCGABHK_96 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| IGCGABHK_14 | 61515 | 69037 | False | Unknown | VOG0572, |
Phigaro v2.4.0 (Database: Jan. 2024 release)