Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LPNCEFFM_11 | 102425 | 103390 | CfxA3 | ARO:3003003 | CfxA3 | 100.00 | 100.00 | AF472622.2 |
| LPNCEFFM_24 | 66226 | 67116 | CblA-1 | ARO:3002999 | CblA-1 | 99.32 | 100.00 | GQ343019.1 |
| LPNCEFFM_30 | 3289 | 4023 | ErmG | ARO:3000522 | ErmG | 100.00 | 100.00 | L42817.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LPNCEFFM_11 | 102425 | 103390 | cfxA3 | Ampicillin | 100.00 | 100.00 | AF472622 |
| LPNCEFFM_30 | 3289 | 4023 | erm(G) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | L42817 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LPNCEFFM_11 | 102425 | 103387 | cfxA3 | extended-spectrum class A beta-lactamase CfxA3 | EXACTX | 100.00 | 100.00 | WP_004348227.1 |
| LPNCEFFM_30 | 3292 | 4023 | erm(G) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G) | EXACTX | 100.00 | 100.00 | WP_063844787.1 |
| LPNCEFFM_24 | 66226 | 67113 | cblA | CblA family class A beta-lactamase | BLASTX | 99.32 | 100.00 | WP_005827792.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LPNCEFFM_1 | 1.0 | 0.0 | 1.0 |
| LPNCEFFM_2 | 1.0 | 0.0 | 1.0 |
| LPNCEFFM_3 | 1.0 | 0.0 | 1.0 |
| LPNCEFFM_4 | 1.0 | 0.0 | 1.0 |
| LPNCEFFM_5 | 1.0 | 0.0 | 1.0 |
| LPNCEFFM_6 | 1.0 | 0.0 | 1.0 |
| LPNCEFFM_7 | 1.0 | 0.0 | 1.0 |
| LPNCEFFM_8 | 0.0 | 1.0 | 0.0 |
| LPNCEFFM_9 | 0.0 | 1.0 | 0.0 |
| LPNCEFFM_10 | 0.0 | 1.0 | 0.0 |
| LPNCEFFM_11 | 0.0 | 1.0 | 0.0 |
| LPNCEFFM_12 | 0.0 | 1.0 | 0.0 |
| LPNCEFFM_13 | 0.0 | 1.0 | 0.0 |
| LPNCEFFM_14 | 0.0 | 1.0 | 0.0 |
| LPNCEFFM_15 | 0.0 | 1.0 | 0.0 |
| LPNCEFFM_16 | 0.0 | 1.0 | 0.0 |
| LPNCEFFM_17 | 0.0 | 1.0 | 0.0 |
| LPNCEFFM_18 | 0.0 | 1.0 | 0.0 |
| LPNCEFFM_19 | 0.0 | 1.0 | 0.0 |
| LPNCEFFM_20 | 0.0 | 1.0 | 0.0 |
| LPNCEFFM_21 | 0.0 | 1.0 | 0.0 |
| LPNCEFFM_22 | 0.0 | 1.0 | 0.0 |
| LPNCEFFM_23 | 0.0 | 1.0 | 0.0 |
| LPNCEFFM_24 | 0.0 | 1.0 | 0.0 |
| LPNCEFFM_25 | 0.0 | 1.0 | 0.0 |
| LPNCEFFM_26 | 0.0 | 1.0 | 0.0 |
| LPNCEFFM_27 | 0.0 | 1.0 | 0.0 |
| LPNCEFFM_28 | 0.0 | 1.0 | 0.0 |
| LPNCEFFM_29 | 0.0 | 1.0 | 0.0 |
| LPNCEFFM_30 | 0.0 | 1.0 | 0.0 |
| LPNCEFFM_31 | 0.0 | 1.0 | 0.0 |
| LPNCEFFM_32 | 1.0 | 0.0 | 1.0 |
| LPNCEFFM_33 | 0.0 | 1.0 | 0.0 |
| LPNCEFFM_34 | 0.0 | 1.0 | 0.0 |
| LPNCEFFM_35 | 0.0 | 1.0 | 0.0 |
| LPNCEFFM_36 | 0.0 | 1.0 | 0.0 |
| LPNCEFFM_37 | 0.0 | 1.0 | 0.0 |
| LPNCEFFM_38 | 0.0 | 1.0 | 0.0 |
| LPNCEFFM_39 | 0.0 | 1.0 | 0.0 |
| LPNCEFFM_40 | 0.0 | 1.0 | 0.0 |
| LPNCEFFM_41 | 0.0 | 1.0 | 0.0 |
| LPNCEFFM_42 | 0.0 | 1.0 | 0.0 |
| LPNCEFFM_43 | 0.0 | 1.0 | 0.0 |
| LPNCEFFM_44 | 0.0 | 1.0 | 0.0 |
| LPNCEFFM_45 | 1.0 | 0.0 | 1.0 |
| LPNCEFFM_46 | 0.0 | 1.0 | 0.0 |
| LPNCEFFM_47 | 0.0 | 1.0 | 0.0 |
| LPNCEFFM_48 | 0.0 | 1.0 | 0.0 |
| LPNCEFFM_49 | 1.0 | 0.0 | 1.0 |
| LPNCEFFM_50 | 1.0 | 0.0 | 1.0 |
| LPNCEFFM_51 | 0.0 | 1.0 | 0.0 |
| LPNCEFFM_52 | 0.0 | 1.0 | 0.0 |
| LPNCEFFM_53 | 0.0 | 1.0 | 0.0 |
| LPNCEFFM_54 | 1.0 | 0.0 | 1.0 |
| LPNCEFFM_55 | 1.0 | 0.0 | 1.0 |
| LPNCEFFM_56 | 1.0 | 0.0 | 1.0 |
| LPNCEFFM_57 | 0.0 | 1.0 | 0.0 |
| LPNCEFFM_58 | 1.0 | 0.0 | 1.0 |
| LPNCEFFM_59 | 1.0 | 0.0 | 1.0 |
| LPNCEFFM_60 | 0.0 | 1.0 | 0.0 |
| LPNCEFFM_61 | 0.0 | 1.0 | 0.0 |
| LPNCEFFM_62 | 0.0 | 1.0 | 0.0 |
| LPNCEFFM_63 | 0.0 | 1.0 | 0.0 |
| LPNCEFFM_64 | 1.0 | 0.0 | 1.0 |
| LPNCEFFM_65 | 1.0 | 0.0 | 1.0 |
| LPNCEFFM_66 | 0.0 | 1.0 | 0.0 |
| LPNCEFFM_67 | 1.0 | 0.0 | 1.0 |
| LPNCEFFM_68 | 1.0 | 0.0 | 1.0 |
| LPNCEFFM_69 | 1.0 | 0.0 | 1.0 |
| LPNCEFFM_70 | 1.0 | 0.0 | 1.0 |
| LPNCEFFM_71 | 1.0 | 0.0 | 1.0 |
| LPNCEFFM_73 | 0.0 | 1.0 | 0.0 |
| LPNCEFFM_74 | 1.0 | 0.0 | 1.0 |
| LPNCEFFM_75 | 1.0 | 0.0 | 1.0 |
| LPNCEFFM_76 | 1.0 | 0.0 | 1.0 |
| LPNCEFFM_77 | 1.0 | 0.0 | 1.0 |
| LPNCEFFM_78 | 0.0 | 1.0 | 0.0 |
| LPNCEFFM_79 | 0.0 | 1.0 | 0.0 |
| LPNCEFFM_80 | 1.0 | 0.0 | 1.0 |
| LPNCEFFM_81 | 0.0 | 1.0 | 0.0 |
| LPNCEFFM_82 | 1.0 | 0.0 | 1.0 |
| LPNCEFFM_83 | 0.0 | 1.0 | 0.0 |
| LPNCEFFM_84 | 0.0 | 1.0 | 0.0 |
| LPNCEFFM_85 | 0.0 | 1.0 | 0.0 |
| LPNCEFFM_86 | 0.0 | 1.0 | 0.0 |
| LPNCEFFM_87 | 0.0 | 1.0 | 0.0 |
| LPNCEFFM_88 | 1.0 | 0.0 | 1.0 |
| LPNCEFFM_89 | 1.0 | 0.0 | 1.0 |
| LPNCEFFM_91 | 0.0 | 1.0 | 0.0 |
| LPNCEFFM_92 | 0.0 | 1.0 | 0.0 |
| LPNCEFFM_93 | 0.0 | 1.0 | 0.0 |
| LPNCEFFM_94 | 1.0 | 0.0 | 1.0 |
| LPNCEFFM_95 | 0.0 | 1.0 | 0.0 |
| LPNCEFFM_96 | 1.0 | 0.0 | 1.0 |
| LPNCEFFM_97 | 1.0 | 0.0 | 1.0 |
| LPNCEFFM_98 | 0.0 | 1.0 | 0.0 |
| LPNCEFFM_99 | 0.0 | 1.0 | 0.0 |
| LPNCEFFM_100 | 1.0 | 0.0 | 1.0 |
| LPNCEFFM_101 | 1.0 | 0.0 | 1.0 |
| LPNCEFFM_102 | 1.0 | 0.0 | 1.0 |
| LPNCEFFM_103 | 1.0 | 0.0 | 1.0 |
| LPNCEFFM_104 | 1.0 | 0.0 | 1.0 |
| LPNCEFFM_105 | 1.0 | 0.0 | 1.0 |
| LPNCEFFM_106 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LPNCEFFM_38 | 23988 | 38520 | True | Myoviridae | / |
Phigaro v2.4.0 (Database: Jan. 2024 release)