Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 1 | 3.16 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LMDLCLFI_8 | 66998 | 68944 | tet(Q) | ARO:3000191 | tet(Q) | 97.81 | 98.63 | Z21523.1 |
| LMDLCLFI_79 | 1081 | 1905 | OXA-347 | ARO:3001777 | OXA-347 | 100.00 | 100.00 | JN086160.1 |
| LMDLCLFI_79 | 78 | 878 | ErmF | ARO:3000498 | ErmF | 98.12 | 100.00 | M17124.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LMDLCLFI_79 | 1081 | 1905 | blaOXA-347 | Unknown Beta-lactam | 100.00 | 100.00 | ACWG01000053 |
| LMDLCLFI_79 | 78 | 878 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.38 | 100.00 | M17808 |
| LMDLCLFI_8 | 66998 | 68910 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 98.75 | 99.33 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LMDLCLFI_79 | 1084 | 1905 | blaOXA-347 | class D beta-lactamase OXA-347 | ALLELEX | 100.00 | 100.00 | WP_004295324.1 |
| LMDLCLFI_79 | 78 | 875 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.50 | 100.00 | WP_002682030.1 |
| LMDLCLFI_8 | 66998 | 68911 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 97.96 | 99.53 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LMDLCLFI_88 | 2024 | 3604 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| LMDLCLFI_73 | 1266 | 1846 | repUS2 | 584 / 681 | 80.48 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LMDLCLFI_1 | 0.0 | 1.0 | 0.0 |
| LMDLCLFI_2 | 0.0 | 1.0 | 0.0 |
| LMDLCLFI_3 | 0.0 | 1.0 | 0.0 |
| LMDLCLFI_4 | 0.0 | 1.0 | 0.0 |
| LMDLCLFI_5 | 0.0 | 1.0 | 0.0 |
| LMDLCLFI_6 | 0.0 | 1.0 | 0.0 |
| LMDLCLFI_7 | 0.0 | 1.0 | 0.0 |
| LMDLCLFI_8 | 1.0 | 0.0 | 1.0 |
| LMDLCLFI_9 | 0.0 | 1.0 | 0.0 |
| LMDLCLFI_10 | 0.0 | 1.0 | 0.0 |
| LMDLCLFI_11 | 0.0 | 1.0 | 0.0 |
| LMDLCLFI_12 | 0.0 | 1.0 | 0.0 |
| LMDLCLFI_13 | 0.0 | 1.0 | 0.0 |
| LMDLCLFI_14 | 0.0 | 1.0 | 0.0 |
| LMDLCLFI_15 | 0.0 | 1.0 | 0.0 |
| LMDLCLFI_16 | 0.0 | 1.0 | 0.0 |
| LMDLCLFI_17 | 0.0 | 1.0 | 0.0 |
| LMDLCLFI_18 | 0.0 | 1.0 | 0.0 |
| LMDLCLFI_19 | 0.0 | 1.0 | 0.0 |
| LMDLCLFI_20 | 0.0 | 1.0 | 0.0 |
| LMDLCLFI_21 | 0.0 | 1.0 | 0.0 |
| LMDLCLFI_22 | 0.0 | 1.0 | 0.0 |
| LMDLCLFI_23 | 0.0 | 1.0 | 0.0 |
| LMDLCLFI_24 | 0.0 | 1.0 | 0.0 |
| LMDLCLFI_25 | 0.0 | 1.0 | 0.0 |
| LMDLCLFI_26 | 0.0 | 1.0 | 0.0 |
| LMDLCLFI_27 | 0.0 | 1.0 | 0.0 |
| LMDLCLFI_28 | 0.0 | 1.0 | 0.0 |
| LMDLCLFI_29 | 0.0 | 1.0 | 0.0 |
| LMDLCLFI_30 | 0.0 | 1.0 | 0.0 |
| LMDLCLFI_31 | 0.0 | 1.0 | 0.0 |
| LMDLCLFI_32 | 0.0 | 1.0 | 0.0 |
| LMDLCLFI_33 | 0.0 | 1.0 | 0.0 |
| LMDLCLFI_34 | 0.0 | 1.0 | 0.0 |
| LMDLCLFI_35 | 0.0 | 1.0 | 0.0 |
| LMDLCLFI_36 | 0.0 | 1.0 | 0.0 |
| LMDLCLFI_37 | 0.0 | 1.0 | 0.0 |
| LMDLCLFI_38 | 0.0 | 1.0 | 0.0 |
| LMDLCLFI_39 | 0.0 | 1.0 | 0.0 |
| LMDLCLFI_40 | 0.0 | 1.0 | 0.0 |
| LMDLCLFI_41 | 0.0 | 1.0 | 0.0 |
| LMDLCLFI_42 | 0.0 | 1.0 | 0.0 |
| LMDLCLFI_43 | 0.0 | 1.0 | 0.0 |
| LMDLCLFI_44 | 0.0 | 1.0 | 0.0 |
| LMDLCLFI_45 | 1.0 | 0.0 | 1.0 |
| LMDLCLFI_46 | 0.0 | 1.0 | 0.0 |
| LMDLCLFI_47 | 0.0 | 1.0 | 0.0 |
| LMDLCLFI_48 | 0.0 | 1.0 | 0.0 |
| LMDLCLFI_49 | 0.0 | 1.0 | 0.0 |
| LMDLCLFI_50 | 0.0 | 1.0 | 0.0 |
| LMDLCLFI_51 | 0.0 | 1.0 | 0.0 |
| LMDLCLFI_52 | 1.0 | 0.0 | 1.0 |
| LMDLCLFI_53 | 0.0 | 1.0 | 0.0 |
| LMDLCLFI_54 | 0.0 | 1.0 | 0.0 |
| LMDLCLFI_55 | 0.0 | 1.0 | 0.0 |
| LMDLCLFI_56 | 0.0 | 1.0 | 0.0 |
| LMDLCLFI_57 | 0.0 | 1.0 | 0.0 |
| LMDLCLFI_58 | 0.0 | 1.0 | 0.0 |
| LMDLCLFI_59 | 1.0 | 0.0 | 1.0 |
| LMDLCLFI_60 | 0.0 | 1.0 | 0.0 |
| LMDLCLFI_61 | 1.0 | 0.0 | 1.0 |
| LMDLCLFI_62 | 0.0 | 1.0 | 0.0 |
| LMDLCLFI_63 | 0.0 | 1.0 | 0.0 |
| LMDLCLFI_64 | 0.0 | 1.0 | 0.0 |
| LMDLCLFI_65 | 0.0 | 1.0 | 0.0 |
| LMDLCLFI_66 | 0.0 | 1.0 | 0.0 |
| LMDLCLFI_67 | 0.0 | 1.0 | 0.0 |
| LMDLCLFI_69 | 1.0 | 0.0 | 1.0 |
| LMDLCLFI_70 | 0.0 | 1.0 | 0.0 |
| LMDLCLFI_71 | 1.0 | 0.0 | 1.0 |
| LMDLCLFI_72 | 0.0 | 1.0 | 0.0 |
| LMDLCLFI_73 | 1.0 | 0.0 | 1.0 |
| LMDLCLFI_74 | 1.0 | 0.0 | 1.0 |
| LMDLCLFI_75 | 1.0 | 0.0 | 1.0 |
| LMDLCLFI_76 | 0.0 | 1.0 | 0.0 |
| LMDLCLFI_77 | 0.0 | 1.0 | 0.0 |
| LMDLCLFI_78 | 1.0 | 0.0 | 1.0 |
| LMDLCLFI_79 | 1.0 | 0.0 | 1.0 |
| LMDLCLFI_80 | 0.0 | 1.0 | 0.0 |
| LMDLCLFI_81 | 1.0 | 0.0 | 1.0 |
| LMDLCLFI_82 | 1.0 | 0.0 | 1.0 |
| LMDLCLFI_83 | 1.0 | 0.0 | 1.0 |
| LMDLCLFI_84 | 1.0 | 0.0 | 1.0 |
| LMDLCLFI_85 | 0.0 | 1.0 | 0.0 |
| LMDLCLFI_86 | 0.0 | 1.0 | 0.0 |
| LMDLCLFI_87 | 0.0 | 1.0 | 0.0 |
| LMDLCLFI_88 | 0.0 | 1.0 | 0.0 |
| LMDLCLFI_89 | 1.0 | 0.0 | 1.0 |
| LMDLCLFI_90 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LMDLCLFI_66 | 59354 | 69460 | False | Siphoviridae | VOG3691, |
Phigaro v2.4.0 (Database: Jan. 2024 release)