Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 1 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LANCIOCH_25 | 12934 | 14907 | tet(Q) | ARO:3000191 | tet(Q) | 96.35 | 100.00 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LANCIOCH_25 | 12982 | 14907 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| LANCIOCH_28 | 12634 | 13584 | cfxA3 | Ampicillin | 86.01 | 98.34 | AF472622 |
| LANCIOCH_28 | 12634 | 13584 | cfxA4 | Unknown Beta-lactam | 86.01 | 98.34 | AY769933 |
| LANCIOCH_28 | 12634 | 13584 | cfxA5 | Unknown Beta-lactam | 86.01 | 98.34 | AY769934 |
| LANCIOCH_28 | 12634 | 13584 | cfxA | Cefoxitin, Ampicillin | 86.01 | 98.34 | U38243 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LANCIOCH_25 | 12982 | 14904 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| LANCIOCH_28 | 12633 | 13586 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 83.65 | 99.07 | WP_004339683.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LANCIOCH_18 | 30229 | 28649 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LANCIOCH_1 | 0.0 | 1.0 | 0.0 |
| LANCIOCH_2 | 0.0 | 1.0 | 0.0 |
| LANCIOCH_3 | 0.0 | 1.0 | 0.0 |
| LANCIOCH_4 | 0.0 | 1.0 | 0.0 |
| LANCIOCH_5 | 0.0 | 1.0 | 0.0 |
| LANCIOCH_6 | 0.0 | 1.0 | 0.0 |
| LANCIOCH_7 | 0.0 | 1.0 | 0.0 |
| LANCIOCH_8 | 0.0 | 1.0 | 0.0 |
| LANCIOCH_9 | 0.0 | 1.0 | 0.0 |
| LANCIOCH_10 | 0.0 | 1.0 | 0.0 |
| LANCIOCH_11 | 0.0 | 1.0 | 0.0 |
| LANCIOCH_12 | 0.0 | 1.0 | 0.0 |
| LANCIOCH_13 | 0.0 | 1.0 | 0.0 |
| LANCIOCH_14 | 0.0 | 1.0 | 0.0 |
| LANCIOCH_15 | 0.0 | 1.0 | 0.0 |
| LANCIOCH_16 | 0.0 | 1.0 | 0.0 |
| LANCIOCH_17 | 0.0 | 1.0 | 0.0 |
| LANCIOCH_18 | 0.0 | 1.0 | 0.0 |
| LANCIOCH_19 | 0.0 | 1.0 | 0.0 |
| LANCIOCH_20 | 0.0 | 1.0 | 0.0 |
| LANCIOCH_21 | 1.0 | 0.0 | 1.0 |
| LANCIOCH_22 | 0.0 | 1.0 | 0.0 |
| LANCIOCH_23 | 1.0 | 0.0 | 1.0 |
| LANCIOCH_24 | 0.0 | 1.0 | 0.0 |
| LANCIOCH_25 | 0.0 | 1.0 | 0.0 |
| LANCIOCH_26 | 0.0 | 1.0 | 0.0 |
| LANCIOCH_27 | 0.0 | 1.0 | 0.0 |
| LANCIOCH_28 | 0.0 | 1.0 | 0.0 |
| LANCIOCH_29 | 1.0 | 0.0 | 1.0 |
| LANCIOCH_30 | 1.0 | 0.0 | 1.0 |
| LANCIOCH_31 | 0.0 | 1.0 | 0.0 |
| LANCIOCH_32 | 0.0 | 1.0 | 0.0 |
| LANCIOCH_33 | 0.0 | 1.0 | 0.0 |
| LANCIOCH_34 | 0.0 | 1.0 | 0.0 |
| LANCIOCH_35 | 0.0 | 1.0 | 0.0 |
| LANCIOCH_36 | 0.0 | 1.0 | 0.0 |
| LANCIOCH_37 | 1.0 | 0.0 | 1.0 |
| LANCIOCH_38 | 1.0 | 0.0 | 1.0 |
| LANCIOCH_39 | 0.0 | 1.0 | 0.0 |
| LANCIOCH_40 | 0.0 | 1.0 | 0.0 |
| LANCIOCH_41 | 0.0 | 1.0 | 0.0 |
| LANCIOCH_42 | 0.0 | 1.0 | 0.0 |
| LANCIOCH_43 | 1.0 | 0.0 | 1.0 |
| LANCIOCH_44 | 0.0 | 1.0 | 0.0 |
| LANCIOCH_45 | 0.0 | 1.0 | 0.0 |
| LANCIOCH_46 | 1.0 | 0.0 | 1.0 |
| LANCIOCH_47 | 1.0 | 0.0 | 1.0 |
| LANCIOCH_48 | 1.0 | 0.0 | 1.0 |
| LANCIOCH_49 | 1.0 | 0.0 | 1.0 |
| LANCIOCH_51 | 0.0 | 1.0 | 0.0 |
| LANCIOCH_52 | 1.0 | 0.0 | 1.0 |
| LANCIOCH_53 | 1.0 | 0.0 | 1.0 |
| LANCIOCH_54 | 1.0 | 0.0 | 1.0 |
| LANCIOCH_55 | 0.0 | 1.0 | 0.0 |
| LANCIOCH_56 | 1.0 | 0.0 | 1.0 |
| LANCIOCH_57 | 1.0 | 0.0 | 1.0 |
| LANCIOCH_58 | 1.0 | 0.0 | 1.0 |
| LANCIOCH_59 | 1.0 | 0.0 | 1.0 |
| LANCIOCH_60 | 0.0 | 1.0 | 0.0 |
| LANCIOCH_61 | 1.0 | 0.0 | 1.0 |
| LANCIOCH_62 | 1.0 | 0.0 | 1.0 |
| LANCIOCH_63 | 0.0 | 1.0 | 0.0 |
| LANCIOCH_65 | 0.0 | 1.0 | 0.0 |
| LANCIOCH_66 | 0.0 | 1.0 | 0.0 |
| LANCIOCH_67 | 0.0 | 1.0 | 0.0 |
| LANCIOCH_68 | 1.0 | 0.0 | 1.0 |
| LANCIOCH_69 | 1.0 | 0.0 | 1.0 |
| LANCIOCH_71 | 1.0 | 0.0 | 1.0 |
| LANCIOCH_72 | 0.0 | 1.0 | 0.0 |
| LANCIOCH_73 | 1.0 | 0.0 | 1.0 |
| LANCIOCH_74 | 1.0 | 0.0 | 1.0 |
| LANCIOCH_75 | 1.0 | 0.0 | 1.0 |
| LANCIOCH_76 | 0.0 | 1.0 | 0.0 |
| LANCIOCH_77 | 1.0 | 0.0 | 1.0 |
| LANCIOCH_78 | 1.0 | 0.0 | 1.0 |
| LANCIOCH_79 | 1.0 | 0.0 | 1.0 |
| LANCIOCH_80 | 0.0 | 1.0 | 0.0 |
| LANCIOCH_81 | 1.0 | 0.0 | 1.0 |
| LANCIOCH_82 | 1.0 | 0.0 | 1.0 |
| LANCIOCH_83 | 0.0 | 1.0 | 0.0 |
| LANCIOCH_84 | 1.0 | 0.0 | 1.0 |
| LANCIOCH_85 | 0.0 | 1.0 | 0.0 |
| LANCIOCH_86 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LANCIOCH_33 | 195618 | 206069 | False | Unknown | VOG0025, |
Phigaro v2.4.0 (Database: Jan. 2024 release)