Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 1 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JHHOHLAH_52 | 104171 | 106096 | tet(Q) | ARO:3000191 | tet(Q) | 97.04 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JHHOHLAH_52 | 104171 | 106096 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | X58717 |
| JHHOHLAH_29 | 13374 | 14324 | cfxA3 | Ampicillin | 86.01 | 98.34 | AF472622 |
| JHHOHLAH_29 | 13374 | 14324 | cfxA4 | Unknown Beta-lactam | 86.01 | 98.34 | AY769933 |
| JHHOHLAH_29 | 13374 | 14324 | cfxA5 | Unknown Beta-lactam | 86.01 | 98.34 | AY769934 |
| JHHOHLAH_29 | 13374 | 14324 | cfxA | Cefoxitin, Ampicillin | 86.01 | 98.34 | U38243 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JHHOHLAH_52 | 104171 | 106093 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_004293868.1 |
| JHHOHLAH_29 | 13373 | 14326 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 83.65 | 99.07 | WP_004339683.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JHHOHLAH_50 | 181565 | 179985 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| JHHOHLAH_37 | 1760 | 2432 | repUS2 | 675 / 681 | 92.44 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JHHOHLAH_1 | 0.0 | 1.0 | 0.0 |
| JHHOHLAH_2 | 0.0 | 1.0 | 0.0 |
| JHHOHLAH_3 | 0.0 | 1.0 | 0.0 |
| JHHOHLAH_4 | 0.0 | 1.0 | 0.0 |
| JHHOHLAH_5 | 0.0 | 1.0 | 0.0 |
| JHHOHLAH_6 | 0.0 | 1.0 | 0.0 |
| JHHOHLAH_7 | 0.0 | 1.0 | 0.0 |
| JHHOHLAH_8 | 0.0 | 1.0 | 0.0 |
| JHHOHLAH_9 | 0.0 | 1.0 | 0.0 |
| JHHOHLAH_10 | 0.0 | 1.0 | 0.0 |
| JHHOHLAH_11 | 0.0 | 1.0 | 0.0 |
| JHHOHLAH_12 | 0.0 | 1.0 | 0.0 |
| JHHOHLAH_13 | 0.0 | 1.0 | 0.0 |
| JHHOHLAH_14 | 0.0 | 1.0 | 0.0 |
| JHHOHLAH_15 | 0.0 | 1.0 | 0.0 |
| JHHOHLAH_16 | 0.0 | 1.0 | 0.0 |
| JHHOHLAH_17 | 0.0 | 1.0 | 0.0 |
| JHHOHLAH_18 | 0.0 | 1.0 | 0.0 |
| JHHOHLAH_19 | 1.0 | 0.0 | 1.0 |
| JHHOHLAH_20 | 0.0 | 1.0 | 0.0 |
| JHHOHLAH_21 | 1.0 | 0.0 | 1.0 |
| JHHOHLAH_22 | 0.0 | 1.0 | 0.0 |
| JHHOHLAH_23 | 1.0 | 0.0 | 1.0 |
| JHHOHLAH_24 | 0.0 | 1.0 | 0.0 |
| JHHOHLAH_25 | 0.0 | 1.0 | 0.0 |
| JHHOHLAH_26 | 1.0 | 0.0 | 1.0 |
| JHHOHLAH_27 | 0.0 | 1.0 | 0.0 |
| JHHOHLAH_28 | 1.0 | 0.0 | 1.0 |
| JHHOHLAH_29 | 0.0 | 1.0 | 0.0 |
| JHHOHLAH_30 | 0.0 | 1.0 | 0.0 |
| JHHOHLAH_31 | 0.0 | 1.0 | 0.0 |
| JHHOHLAH_32 | 0.0 | 1.0 | 0.0 |
| JHHOHLAH_33 | 0.0 | 1.0 | 0.0 |
| JHHOHLAH_34 | 0.0 | 1.0 | 0.0 |
| JHHOHLAH_35 | 1.0 | 0.0 | 1.0 |
| JHHOHLAH_36 | 1.0 | 0.0 | 1.0 |
| JHHOHLAH_37 | 1.0 | 0.0 | 1.0 |
| JHHOHLAH_38 | 0.0 | 1.0 | 0.0 |
| JHHOHLAH_40 | 1.0 | 0.0 | 1.0 |
| JHHOHLAH_41 | 1.0 | 0.0 | 1.0 |
| JHHOHLAH_42 | 1.0 | 0.0 | 1.0 |
| JHHOHLAH_43 | 1.0 | 0.0 | 1.0 |
| JHHOHLAH_44 | 0.0 | 1.0 | 0.0 |
| JHHOHLAH_45 | 0.0 | 1.0 | 0.0 |
| JHHOHLAH_46 | 0.0 | 1.0 | 0.0 |
| JHHOHLAH_48 | 0.0 | 1.0 | 0.0 |
| JHHOHLAH_49 | 0.0 | 1.0 | 0.0 |
| JHHOHLAH_50 | 0.0 | 1.0 | 0.0 |
| JHHOHLAH_51 | 0.0 | 1.0 | 0.0 |
| JHHOHLAH_52 | 0.0 | 1.0 | 0.0 |
| JHHOHLAH_53 | 0.0 | 1.0 | 0.0 |
| JHHOHLAH_54 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JHHOHLAH_11 | 569299 | 573556 | False | Myoviridae | VOG4552, |
Phigaro v2.4.0 (Database: Jan. 2024 release)