Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 1 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NLHAJIBF_22 | 184815 | 186740 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| NLHAJIBF_63 | 105054 | 106019 | CfxA2 | ARO:3003002 | CfxA2 | 99.38 | 100.00 | AF118110.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| NLHAJIBF_22 | 184815 | 186740 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| NLHAJIBF_63 | 105054 | 106019 | cfxA3 | Ampicillin | 98.45 | 100.00 | AF472622 |
| NLHAJIBF_63 | 105054 | 106019 | cfxA4 | Unknown Beta-lactam | 98.45 | 100.00 | AY769933 |
| NLHAJIBF_63 | 105054 | 106019 | cfxA5 | Unknown Beta-lactam | 98.45 | 100.00 | AY769934 |
| NLHAJIBF_63 | 105054 | 106019 | cfxA | Cefoxitin, Ampicillin | 98.45 | 100.00 | U38243 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NLHAJIBF_22 | 184818 | 186740 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| NLHAJIBF_63 | 105057 | 106019 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 99.38 | 100.00 | WP_004339683.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NLHAJIBF_55 | 96184 | 94604 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NLHAJIBF_1 | 0.0 | 1.0 | 0.0 |
| NLHAJIBF_2 | 0.0 | 1.0 | 0.0 |
| NLHAJIBF_3 | 0.0 | 1.0 | 0.0 |
| NLHAJIBF_4 | 0.0 | 1.0 | 0.0 |
| NLHAJIBF_5 | 0.0 | 1.0 | 0.0 |
| NLHAJIBF_6 | 0.0 | 1.0 | 0.0 |
| NLHAJIBF_7 | 0.0 | 1.0 | 0.0 |
| NLHAJIBF_8 | 0.0 | 1.0 | 0.0 |
| NLHAJIBF_9 | 0.0 | 1.0 | 0.0 |
| NLHAJIBF_10 | 0.0 | 1.0 | 0.0 |
| NLHAJIBF_11 | 0.0 | 1.0 | 0.0 |
| NLHAJIBF_12 | 0.0 | 1.0 | 0.0 |
| NLHAJIBF_13 | 0.0 | 1.0 | 0.0 |
| NLHAJIBF_14 | 0.0 | 1.0 | 0.0 |
| NLHAJIBF_15 | 0.0 | 1.0 | 0.0 |
| NLHAJIBF_16 | 0.0 | 1.0 | 0.0 |
| NLHAJIBF_17 | 0.0 | 1.0 | 0.0 |
| NLHAJIBF_18 | 0.0 | 1.0 | 0.0 |
| NLHAJIBF_19 | 0.0 | 1.0 | 0.0 |
| NLHAJIBF_20 | 0.0 | 1.0 | 0.0 |
| NLHAJIBF_21 | 0.0 | 1.0 | 0.0 |
| NLHAJIBF_22 | 0.0 | 1.0 | 0.0 |
| NLHAJIBF_23 | 0.0 | 1.0 | 0.0 |
| NLHAJIBF_24 | 0.0 | 1.0 | 0.0 |
| NLHAJIBF_25 | 0.0 | 1.0 | 0.0 |
| NLHAJIBF_26 | 0.0 | 1.0 | 0.0 |
| NLHAJIBF_27 | 0.0 | 1.0 | 0.0 |
| NLHAJIBF_28 | 0.0 | 1.0 | 0.0 |
| NLHAJIBF_29 | 0.0 | 1.0 | 0.0 |
| NLHAJIBF_30 | 0.0 | 1.0 | 0.0 |
| NLHAJIBF_31 | 0.0 | 1.0 | 0.0 |
| NLHAJIBF_32 | 1.0 | 0.0 | 1.0 |
| NLHAJIBF_33 | 0.0 | 1.0 | 0.0 |
| NLHAJIBF_34 | 0.0 | 1.0 | 0.0 |
| NLHAJIBF_35 | 0.0 | 1.0 | 0.0 |
| NLHAJIBF_36 | 0.0 | 1.0 | 0.0 |
| NLHAJIBF_37 | 1.0 | 0.0 | 1.0 |
| NLHAJIBF_38 | 1.0 | 0.0 | 1.0 |
| NLHAJIBF_39 | 0.0 | 1.0 | 0.0 |
| NLHAJIBF_40 | 0.0 | 1.0 | 0.0 |
| NLHAJIBF_41 | 0.0 | 1.0 | 0.0 |
| NLHAJIBF_42 | 1.0 | 0.0 | 1.0 |
| NLHAJIBF_43 | 0.0 | 1.0 | 0.0 |
| NLHAJIBF_44 | 0.0 | 1.0 | 0.0 |
| NLHAJIBF_45 | 0.0 | 1.0 | 0.0 |
| NLHAJIBF_46 | 0.0 | 1.0 | 0.0 |
| NLHAJIBF_47 | 0.0 | 1.0 | 0.0 |
| NLHAJIBF_49 | 1.0 | 0.0 | 1.0 |
| NLHAJIBF_50 | 0.0 | 1.0 | 0.0 |
| NLHAJIBF_51 | 1.0 | 0.0 | 1.0 |
| NLHAJIBF_52 | 1.0 | 0.0 | 1.0 |
| NLHAJIBF_53 | 0.0 | 1.0 | 0.0 |
| NLHAJIBF_54 | 1.0 | 0.0 | 1.0 |
| NLHAJIBF_55 | 0.0 | 1.0 | 0.0 |
| NLHAJIBF_56 | 1.0 | 0.0 | 1.0 |
| NLHAJIBF_57 | 1.0 | 0.0 | 1.0 |
| NLHAJIBF_58 | 1.0 | 0.0 | 1.0 |
| NLHAJIBF_59 | 1.0 | 0.0 | 1.0 |
| NLHAJIBF_60 | 1.0 | 0.0 | 1.0 |
| NLHAJIBF_61 | 0.0 | 1.0 | 0.0 |
| NLHAJIBF_62 | 0.0 | 1.0 | 0.0 |
| NLHAJIBF_63 | 0.0 | 1.0 | 0.0 |
| NLHAJIBF_64 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NLHAJIBF_62 | 98213 | 109691 | False | Siphoviridae | VOG0572, |
Phigaro v2.4.0 (Database: Jan. 2024 release)