Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 1 | 1.41 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GBFDGMEF_93 | 76924 | 78849 | tet(Q) | ARO:3000191 | tet(Q) | 96.10 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GBFDGMEF_93 | 76924 | 78849 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 96.83 | 100.00 | X58717 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GBFDGMEF_93 | 76927 | 78849 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 98.75 | 100.00 | WP_063856409.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GBFDGMEF_34 | 11436 | 9856 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 80.64 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| GBFDGMEF_96 | 794 | 1473 | repUS2 | 682 / 681 | 98.53 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GBFDGMEF_1 | 0.0 | 1.0 | 0.0 |
| GBFDGMEF_2 | 1.0 | 0.0 | 1.0 |
| GBFDGMEF_3 | 1.0 | 0.0 | 1.0 |
| GBFDGMEF_4 | 1.0 | 0.0 | 1.0 |
| GBFDGMEF_5 | 0.0 | 1.0 | 0.0 |
| GBFDGMEF_6 | 0.0 | 1.0 | 0.0 |
| GBFDGMEF_7 | 0.0 | 1.0 | 0.0 |
| GBFDGMEF_8 | 0.0 | 1.0 | 0.0 |
| GBFDGMEF_9 | 0.0 | 1.0 | 0.0 |
| GBFDGMEF_10 | 0.0 | 1.0 | 0.0 |
| GBFDGMEF_11 | 0.0 | 1.0 | 0.0 |
| GBFDGMEF_12 | 0.0 | 1.0 | 0.0 |
| GBFDGMEF_13 | 0.0 | 1.0 | 0.0 |
| GBFDGMEF_14 | 0.0 | 1.0 | 0.0 |
| GBFDGMEF_15 | 0.0 | 1.0 | 0.0 |
| GBFDGMEF_16 | 0.0 | 1.0 | 0.0 |
| GBFDGMEF_17 | 0.0 | 1.0 | 0.0 |
| GBFDGMEF_18 | 0.0 | 1.0 | 0.0 |
| GBFDGMEF_19 | 0.0 | 1.0 | 0.0 |
| GBFDGMEF_20 | 0.0 | 1.0 | 0.0 |
| GBFDGMEF_21 | 0.0 | 1.0 | 0.0 |
| GBFDGMEF_22 | 0.0 | 1.0 | 0.0 |
| GBFDGMEF_23 | 0.0 | 1.0 | 0.0 |
| GBFDGMEF_24 | 0.0 | 1.0 | 0.0 |
| GBFDGMEF_25 | 0.0 | 1.0 | 0.0 |
| GBFDGMEF_26 | 0.0 | 1.0 | 0.0 |
| GBFDGMEF_27 | 0.0 | 1.0 | 0.0 |
| GBFDGMEF_28 | 0.0 | 1.0 | 0.0 |
| GBFDGMEF_29 | 0.0 | 1.0 | 0.0 |
| GBFDGMEF_30 | 0.0 | 1.0 | 0.0 |
| GBFDGMEF_31 | 0.0 | 1.0 | 0.0 |
| GBFDGMEF_32 | 0.0 | 1.0 | 0.0 |
| GBFDGMEF_33 | 0.0 | 1.0 | 0.0 |
| GBFDGMEF_34 | 0.0 | 1.0 | 0.0 |
| GBFDGMEF_35 | 0.0 | 1.0 | 0.0 |
| GBFDGMEF_36 | 0.0 | 1.0 | 0.0 |
| GBFDGMEF_37 | 0.0 | 1.0 | 0.0 |
| GBFDGMEF_38 | 0.0 | 1.0 | 0.0 |
| GBFDGMEF_39 | 0.0 | 1.0 | 0.0 |
| GBFDGMEF_40 | 0.0 | 1.0 | 0.0 |
| GBFDGMEF_41 | 0.0 | 1.0 | 0.0 |
| GBFDGMEF_42 | 0.0 | 1.0 | 0.0 |
| GBFDGMEF_43 | 0.0 | 1.0 | 0.0 |
| GBFDGMEF_44 | 1.0 | 0.0 | 1.0 |
| GBFDGMEF_45 | 1.0 | 0.0 | 1.0 |
| GBFDGMEF_46 | 0.0 | 1.0 | 0.0 |
| GBFDGMEF_47 | 0.0 | 1.0 | 0.0 |
| GBFDGMEF_48 | 0.0 | 1.0 | 0.0 |
| GBFDGMEF_49 | 0.0 | 1.0 | 0.0 |
| GBFDGMEF_50 | 0.0 | 1.0 | 0.0 |
| GBFDGMEF_51 | 0.0 | 1.0 | 0.0 |
| GBFDGMEF_52 | 0.0 | 1.0 | 0.0 |
| GBFDGMEF_53 | 0.0 | 1.0 | 0.0 |
| GBFDGMEF_54 | 0.0 | 1.0 | 0.0 |
| GBFDGMEF_55 | 0.0 | 1.0 | 0.0 |
| GBFDGMEF_56 | 0.0 | 1.0 | 0.0 |
| GBFDGMEF_57 | 0.0 | 1.0 | 0.0 |
| GBFDGMEF_58 | 0.0 | 1.0 | 0.0 |
| GBFDGMEF_59 | 1.0 | 0.0 | 1.0 |
| GBFDGMEF_60 | 0.0 | 1.0 | 0.0 |
| GBFDGMEF_61 | 0.0 | 1.0 | 0.0 |
| GBFDGMEF_62 | 0.0 | 1.0 | 0.0 |
| GBFDGMEF_63 | 1.0 | 0.0 | 1.0 |
| GBFDGMEF_64 | 1.0 | 0.0 | 1.0 |
| GBFDGMEF_65 | 1.0 | 0.0 | 1.0 |
| GBFDGMEF_66 | 0.0 | 1.0 | 0.0 |
| GBFDGMEF_67 | 0.0 | 1.0 | 0.0 |
| GBFDGMEF_68 | 0.0 | 1.0 | 0.0 |
| GBFDGMEF_69 | 1.0 | 0.0 | 1.0 |
| GBFDGMEF_70 | 1.0 | 0.0 | 1.0 |
| GBFDGMEF_71 | 0.0 | 1.0 | 0.0 |
| GBFDGMEF_72 | 0.0 | 1.0 | 0.0 |
| GBFDGMEF_73 | 0.0 | 1.0 | 0.0 |
| GBFDGMEF_74 | 0.0 | 1.0 | 0.0 |
| GBFDGMEF_75 | 0.0 | 1.0 | 0.0 |
| GBFDGMEF_76 | 0.0 | 1.0 | 0.0 |
| GBFDGMEF_77 | 1.0 | 0.0 | 1.0 |
| GBFDGMEF_78 | 1.0 | 0.0 | 1.0 |
| GBFDGMEF_79 | 1.0 | 0.0 | 1.0 |
| GBFDGMEF_80 | 0.0 | 1.0 | 0.0 |
| GBFDGMEF_81 | 1.0 | 0.0 | 1.0 |
| GBFDGMEF_82 | 0.0 | 1.0 | 0.0 |
| GBFDGMEF_84 | 0.0 | 1.0 | 0.0 |
| GBFDGMEF_85 | 0.0 | 1.0 | 0.0 |
| GBFDGMEF_86 | 1.0 | 0.0 | 1.0 |
| GBFDGMEF_87 | 1.0 | 0.0 | 1.0 |
| GBFDGMEF_88 | 1.0 | 0.0 | 1.0 |
| GBFDGMEF_89 | 1.0 | 0.0 | 1.0 |
| GBFDGMEF_90 | 1.0 | 0.0 | 1.0 |
| GBFDGMEF_91 | 1.0 | 0.0 | 1.0 |
| GBFDGMEF_92 | 1.0 | 0.0 | 1.0 |
| GBFDGMEF_93 | 0.0 | 1.0 | 0.0 |
| GBFDGMEF_94 | 1.0 | 0.0 | 1.0 |
| GBFDGMEF_95 | 0.0 | 1.0 | 0.0 |
| GBFDGMEF_96 | 1.0 | 0.0 | 1.0 |
| GBFDGMEF_97 | 1.0 | 0.0 | 1.0 |
| GBFDGMEF_98 | 0.0 | 1.0 | 0.0 |
| GBFDGMEF_99 | 1.0 | 0.0 | 1.0 |
| GBFDGMEF_100 | 0.0 | 1.0 | 0.0 |
| GBFDGMEF_101 | 1.0 | 0.0 | 1.0 |
| GBFDGMEF_102 | 1.0 | 0.0 | 1.0 |
| GBFDGMEF_103 | 1.0 | 0.0 | 1.0 |
| GBFDGMEF_104 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GBFDGMEF_104 | 40086 | 46721 | False | Unknown | VOG10904, |
Phigaro v2.4.0 (Database: Jan. 2024 release)