Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FMECACOI_22 | 269700 | 270437 | ErmB | ARO:3000375 | ErmB | 97.96 | 98.79 | AF242872.1 |
| FMECACOI_64 | 128042 | 129967 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| FMECACOI_64 | 128042 | 129967 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| FMECACOI_22 | 269700 | 270437 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.73 | 100.00 | U18931 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FMECACOI_64 | 128042 | 129964 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| FMECACOI_22 | 269700 | 270434 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | BLASTX | 99.18 | 100.00 | WP_002292226.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| FMECACOI_1 | 0.0 | 1.0 | 0.0 |
| FMECACOI_2 | 0.0 | 1.0 | 0.0 |
| FMECACOI_3 | 0.0 | 1.0 | 0.0 |
| FMECACOI_4 | 0.0 | 1.0 | 0.0 |
| FMECACOI_5 | 0.0 | 1.0 | 0.0 |
| FMECACOI_6 | 0.0 | 1.0 | 0.0 |
| FMECACOI_7 | 0.0 | 1.0 | 0.0 |
| FMECACOI_8 | 0.0 | 1.0 | 0.0 |
| FMECACOI_9 | 0.0 | 1.0 | 0.0 |
| FMECACOI_10 | 0.0 | 1.0 | 0.0 |
| FMECACOI_11 | 0.0 | 1.0 | 0.0 |
| FMECACOI_12 | 0.0 | 1.0 | 0.0 |
| FMECACOI_13 | 0.0 | 1.0 | 0.0 |
| FMECACOI_14 | 0.0 | 1.0 | 0.0 |
| FMECACOI_15 | 0.0 | 1.0 | 0.0 |
| FMECACOI_16 | 0.0 | 1.0 | 0.0 |
| FMECACOI_17 | 0.0 | 1.0 | 0.0 |
| FMECACOI_18 | 0.0 | 1.0 | 0.0 |
| FMECACOI_19 | 0.0 | 1.0 | 0.0 |
| FMECACOI_20 | 0.0 | 1.0 | 0.0 |
| FMECACOI_21 | 0.0 | 1.0 | 0.0 |
| FMECACOI_22 | 0.0 | 1.0 | 0.0 |
| FMECACOI_23 | 0.0 | 1.0 | 0.0 |
| FMECACOI_24 | 0.0 | 1.0 | 0.0 |
| FMECACOI_25 | 0.0 | 1.0 | 0.0 |
| FMECACOI_26 | 0.0 | 1.0 | 0.0 |
| FMECACOI_27 | 0.0 | 1.0 | 0.0 |
| FMECACOI_28 | 0.0 | 1.0 | 0.0 |
| FMECACOI_29 | 0.0 | 1.0 | 0.0 |
| FMECACOI_30 | 0.0 | 1.0 | 0.0 |
| FMECACOI_31 | 0.0 | 1.0 | 0.0 |
| FMECACOI_32 | 0.0 | 1.0 | 0.0 |
| FMECACOI_33 | 0.0 | 1.0 | 0.0 |
| FMECACOI_34 | 0.0 | 1.0 | 0.0 |
| FMECACOI_35 | 0.0 | 1.0 | 0.0 |
| FMECACOI_36 | 0.0 | 1.0 | 0.0 |
| FMECACOI_37 | 0.0 | 1.0 | 0.0 |
| FMECACOI_38 | 0.0 | 1.0 | 0.0 |
| FMECACOI_39 | 0.0 | 1.0 | 0.0 |
| FMECACOI_40 | 0.0 | 1.0 | 0.0 |
| FMECACOI_41 | 0.0 | 1.0 | 0.0 |
| FMECACOI_42 | 1.0 | 0.0 | 1.0 |
| FMECACOI_43 | 1.0 | 0.0 | 1.0 |
| FMECACOI_44 | 0.0 | 1.0 | 0.0 |
| FMECACOI_45 | 1.0 | 0.0 | 1.0 |
| FMECACOI_47 | 0.0 | 1.0 | 0.0 |
| FMECACOI_48 | 1.0 | 0.0 | 1.0 |
| FMECACOI_49 | 1.0 | 0.0 | 1.0 |
| FMECACOI_50 | 0.0 | 1.0 | 0.0 |
| FMECACOI_51 | 0.0 | 1.0 | 0.0 |
| FMECACOI_52 | 0.0 | 1.0 | 0.0 |
| FMECACOI_53 | 1.0 | 0.0 | 1.0 |
| FMECACOI_54 | 0.0 | 1.0 | 0.0 |
| FMECACOI_55 | 0.0 | 1.0 | 0.0 |
| FMECACOI_56 | 1.0 | 0.0 | 1.0 |
| FMECACOI_57 | 1.0 | 0.0 | 1.0 |
| FMECACOI_58 | 0.0 | 1.0 | 0.0 |
| FMECACOI_59 | 1.0 | 0.0 | 1.0 |
| FMECACOI_60 | 1.0 | 0.0 | 1.0 |
| FMECACOI_61 | 1.0 | 0.0 | 1.0 |
| FMECACOI_62 | 0.0 | 1.0 | 0.0 |
| FMECACOI_63 | 0.0 | 1.0 | 0.0 |
| FMECACOI_64 | 0.0 | 1.0 | 0.0 |
| FMECACOI_65 | 0.0 | 1.0 | 0.0 |
| FMECACOI_66 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| FMECACOI_22 | 241355 | 250253 | True | Siphoviridae | VOG6282, |
| FMECACOI_33 | 368159 | 374807 | False | Siphoviridae | VOG4544, |
Phigaro v2.4.0 (Database: Jan. 2024 release)