Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 0 | 5.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IGMOHGOF_8 | 20779 | 21681 | cepA | ARO:3003559 | cepA | 99.67 | 100.00 | U05883.1 |
| IGMOHGOF_46 | 606 | 1928 | tet(Q) | ARO:3000191 | tet(Q) | 97.73 | 67.12 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| IGMOHGOF_55 | 67235 | 68101 | ant(6)-Ia | Streptomycin | 100.00 | 100.00 | KF864551 |
| IGMOHGOF_8 | 20779 | 21681 | cepA | Unknown Beta-lactam | 100.00 | 100.00 | FR688022 |
| IGMOHGOF_46 | 654 | 1928 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 98.43 | 66.20 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IGMOHGOF_55 | 72173 | 72946 | aad9 | ANT(9) family aminoglycoside nucleotidyltransferase | EXACTX | 100.00 | 100.00 | WP_002578722.1 |
| IGMOHGOF_55 | 67238 | 68101 | aadE | aminoglycoside 6-adenylyltransferase AadE | EXACTX | 100.00 | 100.00 | WP_001255868.1 |
| IGMOHGOF_8 | 20782 | 21681 | cepA | CepA family extended-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005816369.1 |
| IGMOHGOF_8 | 43959 | 44468 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| IGMOHGOF_8 | 42730 | 43605 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | PARTIALX | 99.32 | 72.82 | WP_063853729.1 |
| IGMOHGOF_46 | 654 | 1928 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | PARTIAL_CONTIG_ENDX | 97.65 | 66.30 | WP_002560998.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| IGMOHGOF_1 | 0.0 | 1.0 | 0.0 |
| IGMOHGOF_2 | 0.0 | 1.0 | 0.0 |
| IGMOHGOF_3 | 0.0 | 1.0 | 0.0 |
| IGMOHGOF_4 | 0.0 | 1.0 | 0.0 |
| IGMOHGOF_5 | 0.0 | 1.0 | 0.0 |
| IGMOHGOF_6 | 0.0 | 1.0 | 0.0 |
| IGMOHGOF_7 | 0.0 | 1.0 | 0.0 |
| IGMOHGOF_8 | 0.0 | 1.0 | 0.0 |
| IGMOHGOF_9 | 1.0 | 0.0 | 1.0 |
| IGMOHGOF_10 | 0.0 | 1.0 | 0.0 |
| IGMOHGOF_11 | 0.0 | 1.0 | 0.0 |
| IGMOHGOF_12 | 0.0 | 1.0 | 0.0 |
| IGMOHGOF_13 | 0.0 | 1.0 | 0.0 |
| IGMOHGOF_14 | 0.0 | 1.0 | 0.0 |
| IGMOHGOF_15 | 0.0 | 1.0 | 0.0 |
| IGMOHGOF_16 | 0.0 | 1.0 | 0.0 |
| IGMOHGOF_17 | 0.0 | 1.0 | 0.0 |
| IGMOHGOF_18 | 0.0 | 1.0 | 0.0 |
| IGMOHGOF_19 | 0.0 | 1.0 | 0.0 |
| IGMOHGOF_20 | 0.0 | 1.0 | 0.0 |
| IGMOHGOF_21 | 0.0 | 1.0 | 0.0 |
| IGMOHGOF_22 | 0.0 | 1.0 | 0.0 |
| IGMOHGOF_23 | 0.0 | 1.0 | 0.0 |
| IGMOHGOF_24 | 0.0 | 1.0 | 0.0 |
| IGMOHGOF_25 | 1.0 | 0.0 | 1.0 |
| IGMOHGOF_26 | 0.0 | 1.0 | 0.0 |
| IGMOHGOF_27 | 0.0 | 1.0 | 0.0 |
| IGMOHGOF_28 | 0.0 | 1.0 | 0.0 |
| IGMOHGOF_29 | 0.0 | 1.0 | 0.0 |
| IGMOHGOF_30 | 1.0 | 0.0 | 1.0 |
| IGMOHGOF_31 | 0.0 | 1.0 | 0.0 |
| IGMOHGOF_32 | 1.0 | 0.0 | 1.0 |
| IGMOHGOF_33 | 0.0 | 1.0 | 0.0 |
| IGMOHGOF_34 | 1.0 | 0.0 | 1.0 |
| IGMOHGOF_35 | 1.0 | 0.0 | 1.0 |
| IGMOHGOF_36 | 0.0 | 1.0 | 0.0 |
| IGMOHGOF_38 | 1.0 | 0.0 | 1.0 |
| IGMOHGOF_39 | 0.0 | 1.0 | 0.0 |
| IGMOHGOF_40 | 0.0 | 1.0 | 0.0 |
| IGMOHGOF_41 | 0.0 | 1.0 | 0.0 |
| IGMOHGOF_42 | 1.0 | 0.0 | 1.0 |
| IGMOHGOF_43 | 0.0 | 1.0 | 0.0 |
| IGMOHGOF_44 | 0.0 | 1.0 | 0.0 |
| IGMOHGOF_45 | 0.0 | 1.0 | 0.0 |
| IGMOHGOF_46 | 1.0 | 0.0 | 1.0 |
| IGMOHGOF_47 | 1.0 | 0.0 | 1.0 |
| IGMOHGOF_48 | 0.0 | 1.0 | 0.0 |
| IGMOHGOF_49 | 1.0 | 0.0 | 1.0 |
| IGMOHGOF_50 | 0.0 | 1.0 | 0.0 |
| IGMOHGOF_51 | 1.0 | 0.0 | 1.0 |
| IGMOHGOF_52 | 0.0 | 1.0 | 0.0 |
| IGMOHGOF_53 | 1.0 | 0.0 | 1.0 |
| IGMOHGOF_54 | 0.0 | 1.0 | 0.0 |
| IGMOHGOF_55 | 0.0 | 1.0 | 0.0 |
| IGMOHGOF_56 | 0.0 | 1.0 | 0.0 |
| IGMOHGOF_57 | 0.0 | 1.0 | 0.0 |
| IGMOHGOF_58 | 0.0 | 1.0 | 0.0 |
| IGMOHGOF_59 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)