Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CCEFEGPN_7 | 145151 | 146116 | CfxA3 | ARO:3003003 | CfxA3 | 100.00 | 100.00 | AF472622.2 |
| CCEFEGPN_54 | 2892 | 4817 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CCEFEGPN_7 | 145151 | 146116 | cfxA3 | Ampicillin | 100.00 | 100.00 | AF472622 |
| CCEFEGPN_54 | 2892 | 4817 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CCEFEGPN_7 | 145154 | 146116 | cfxA3 | extended-spectrum class A beta-lactamase CfxA3 | EXACTX | 100.00 | 100.00 | WP_004348227.1 |
| CCEFEGPN_54 | 2892 | 4814 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| CCEFEGPN_84 | 1771 | 2351 | repUS2 | 584 / 681 | 80.48 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CCEFEGPN_1 | 1.0 | 0.0 | 1.0 |
| CCEFEGPN_2 | 1.0 | 0.0 | 1.0 |
| CCEFEGPN_3 | 0.0 | 1.0 | 0.0 |
| CCEFEGPN_4 | 0.0 | 1.0 | 0.0 |
| CCEFEGPN_5 | 0.0 | 1.0 | 0.0 |
| CCEFEGPN_6 | 0.0 | 1.0 | 0.0 |
| CCEFEGPN_7 | 0.0 | 1.0 | 0.0 |
| CCEFEGPN_8 | 0.0 | 1.0 | 0.0 |
| CCEFEGPN_9 | 0.0 | 1.0 | 0.0 |
| CCEFEGPN_10 | 0.0 | 1.0 | 0.0 |
| CCEFEGPN_11 | 0.0 | 1.0 | 0.0 |
| CCEFEGPN_12 | 0.0 | 1.0 | 0.0 |
| CCEFEGPN_13 | 0.0 | 1.0 | 0.0 |
| CCEFEGPN_14 | 0.0 | 1.0 | 0.0 |
| CCEFEGPN_15 | 0.0 | 1.0 | 0.0 |
| CCEFEGPN_16 | 0.0 | 1.0 | 0.0 |
| CCEFEGPN_17 | 0.0 | 1.0 | 0.0 |
| CCEFEGPN_18 | 0.0 | 1.0 | 0.0 |
| CCEFEGPN_19 | 0.0 | 1.0 | 0.0 |
| CCEFEGPN_20 | 0.0 | 1.0 | 0.0 |
| CCEFEGPN_21 | 0.0 | 1.0 | 0.0 |
| CCEFEGPN_22 | 0.0 | 1.0 | 0.0 |
| CCEFEGPN_23 | 0.0 | 1.0 | 0.0 |
| CCEFEGPN_24 | 0.0 | 1.0 | 0.0 |
| CCEFEGPN_25 | 0.0 | 1.0 | 0.0 |
| CCEFEGPN_26 | 0.0 | 1.0 | 0.0 |
| CCEFEGPN_27 | 0.0 | 1.0 | 0.0 |
| CCEFEGPN_28 | 0.0 | 1.0 | 0.0 |
| CCEFEGPN_29 | 0.0 | 1.0 | 0.0 |
| CCEFEGPN_30 | 0.0 | 1.0 | 0.0 |
| CCEFEGPN_31 | 0.0 | 1.0 | 0.0 |
| CCEFEGPN_32 | 0.0 | 1.0 | 0.0 |
| CCEFEGPN_33 | 0.0 | 1.0 | 0.0 |
| CCEFEGPN_34 | 0.0 | 1.0 | 0.0 |
| CCEFEGPN_35 | 0.0 | 1.0 | 0.0 |
| CCEFEGPN_36 | 0.0 | 1.0 | 0.0 |
| CCEFEGPN_37 | 0.0 | 1.0 | 0.0 |
| CCEFEGPN_38 | 0.0 | 1.0 | 0.0 |
| CCEFEGPN_39 | 1.0 | 0.0 | 1.0 |
| CCEFEGPN_40 | 0.0 | 1.0 | 0.0 |
| CCEFEGPN_41 | 0.0 | 1.0 | 0.0 |
| CCEFEGPN_42 | 0.0 | 1.0 | 0.0 |
| CCEFEGPN_43 | 0.0 | 1.0 | 0.0 |
| CCEFEGPN_44 | 0.0 | 1.0 | 0.0 |
| CCEFEGPN_45 | 0.0 | 1.0 | 0.0 |
| CCEFEGPN_46 | 0.0 | 1.0 | 0.0 |
| CCEFEGPN_47 | 0.0 | 1.0 | 0.0 |
| CCEFEGPN_48 | 0.0 | 1.0 | 0.0 |
| CCEFEGPN_49 | 0.0 | 1.0 | 0.0 |
| CCEFEGPN_50 | 0.0 | 1.0 | 0.0 |
| CCEFEGPN_51 | 0.0 | 1.0 | 0.0 |
| CCEFEGPN_52 | 0.0 | 1.0 | 0.0 |
| CCEFEGPN_53 | 0.0 | 1.0 | 0.0 |
| CCEFEGPN_54 | 0.0 | 1.0 | 0.0 |
| CCEFEGPN_55 | 0.0 | 1.0 | 0.0 |
| CCEFEGPN_56 | 0.0 | 1.0 | 0.0 |
| CCEFEGPN_57 | 0.0 | 1.0 | 0.0 |
| CCEFEGPN_58 | 0.0 | 1.0 | 0.0 |
| CCEFEGPN_59 | 0.0 | 1.0 | 0.0 |
| CCEFEGPN_60 | 0.0 | 1.0 | 0.0 |
| CCEFEGPN_61 | 1.0 | 0.0 | 1.0 |
| CCEFEGPN_62 | 0.0 | 1.0 | 0.0 |
| CCEFEGPN_63 | 1.0 | 0.0 | 1.0 |
| CCEFEGPN_64 | 0.0 | 1.0 | 0.0 |
| CCEFEGPN_65 | 0.0 | 1.0 | 0.0 |
| CCEFEGPN_66 | 0.0 | 1.0 | 0.0 |
| CCEFEGPN_67 | 1.0 | 0.0 | 1.0 |
| CCEFEGPN_68 | 0.0 | 1.0 | 0.0 |
| CCEFEGPN_69 | 0.0 | 1.0 | 0.0 |
| CCEFEGPN_70 | 1.0 | 0.0 | 1.0 |
| CCEFEGPN_72 | 0.0 | 1.0 | 0.0 |
| CCEFEGPN_73 | 0.0 | 1.0 | 0.0 |
| CCEFEGPN_74 | 0.0 | 1.0 | 0.0 |
| CCEFEGPN_75 | 0.0 | 1.0 | 0.0 |
| CCEFEGPN_76 | 0.0 | 1.0 | 0.0 |
| CCEFEGPN_77 | 0.0 | 1.0 | 0.0 |
| CCEFEGPN_78 | 0.0 | 1.0 | 0.0 |
| CCEFEGPN_79 | 0.0 | 1.0 | 0.0 |
| CCEFEGPN_80 | 1.0 | 0.0 | 1.0 |
| CCEFEGPN_81 | 0.0 | 1.0 | 0.0 |
| CCEFEGPN_82 | 0.0 | 1.0 | 0.0 |
| CCEFEGPN_83 | 1.0 | 0.0 | 1.0 |
| CCEFEGPN_84 | 1.0 | 0.0 | 1.0 |
| CCEFEGPN_85 | 0.0 | 1.0 | 0.0 |
| CCEFEGPN_86 | 1.0 | 0.0 | 1.0 |
| CCEFEGPN_87 | 1.0 | 0.0 | 1.0 |
| CCEFEGPN_88 | 1.0 | 0.0 | 1.0 |
| CCEFEGPN_89 | 1.0 | 0.0 | 1.0 |
| CCEFEGPN_90 | 0.0 | 1.0 | 0.0 |
| CCEFEGPN_91 | 0.0 | 1.0 | 0.0 |
| CCEFEGPN_92 | 0.0 | 1.0 | 0.0 |
| CCEFEGPN_93 | 1.0 | 0.0 | 1.0 |
| CCEFEGPN_95 | 1.0 | 0.0 | 1.0 |
| CCEFEGPN_96 | 0.0 | 1.0 | 0.0 |
| CCEFEGPN_97 | 1.0 | 0.0 | 1.0 |
| CCEFEGPN_98 | 1.0 | 0.0 | 1.0 |
| CCEFEGPN_99 | 0.0 | 1.0 | 0.0 |
| CCEFEGPN_100 | 0.0 | 1.0 | 0.0 |
| CCEFEGPN_101 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CCEFEGPN_9 | 61179 | 67827 | False | Siphoviridae | VOG0204, |
Phigaro v2.4.0 (Database: Jan. 2024 release)