Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LLELKLKL_56 | 48604 | 49467 | aadS | ARO:3004683 | aadS | 100.00 | 100.00 | M72415.1 |
| LLELKLKL_56 | 47292 | 48428 | tet(X) | ARO:3000205 | tet(X) | 99.47 | 97.42 | M37699.1 |
| LLELKLKL_56 | 45954 | 47093 | tet(X1) | ARO:3005166 | tet(X1) | 99.72 | 105.57 | AJ311171.1 |
| LLELKLKL_85 | 174 | 2147 | tet(Q) | ARO:3000191 | tet(Q) | 100.00 | 100.00 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LLELKLKL_85 | 222 | 2147 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | Z21523 |
| LLELKLKL_56 | 47262 | 48428 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.83 | 100.00 | M37699 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LLELKLKL_56 | 48604 | 49464 | aadS | aminoglycoside 6-adenylyltransferase AadS | EXACTX | 100.00 | 100.00 | WP_003013318.1 |
| LLELKLKL_85 | 222 | 2144 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_002560998.1 |
| LLELKLKL_56 | 47262 | 48425 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | EXACTX | 100.00 | 100.00 | WP_008651082.1 |
| LLELKLKL_56 | 45954 | 47090 | tet(X1) | tetracycline-inactivating monooxygenase Tet(X1) | BLASTX | 99.74 | 100.00 | WP_204376222.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| LLELKLKL_115 | 1059 | 1738 | repUS2 | 682 / 681 | 98.53 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LLELKLKL_1 | 1.0 | 0.0 | 1.0 |
| LLELKLKL_2 | 1.0 | 0.0 | 1.0 |
| LLELKLKL_3 | 1.0 | 0.0 | 1.0 |
| LLELKLKL_4 | 0.0 | 1.0 | 0.0 |
| LLELKLKL_5 | 1.0 | 0.0 | 1.0 |
| LLELKLKL_6 | 0.0 | 1.0 | 0.0 |
| LLELKLKL_7 | 0.0 | 1.0 | 0.0 |
| LLELKLKL_8 | 0.0 | 1.0 | 0.0 |
| LLELKLKL_9 | 1.0 | 0.0 | 1.0 |
| LLELKLKL_10 | 0.0 | 1.0 | 0.0 |
| LLELKLKL_11 | 0.0 | 1.0 | 0.0 |
| LLELKLKL_12 | 1.0 | 0.0 | 1.0 |
| LLELKLKL_13 | 1.0 | 0.0 | 1.0 |
| LLELKLKL_14 | 0.0 | 1.0 | 0.0 |
| LLELKLKL_15 | 0.0 | 1.0 | 0.0 |
| LLELKLKL_16 | 0.0 | 1.0 | 0.0 |
| LLELKLKL_17 | 1.0 | 0.0 | 1.0 |
| LLELKLKL_18 | 1.0 | 0.0 | 1.0 |
| LLELKLKL_19 | 1.0 | 0.0 | 1.0 |
| LLELKLKL_20 | 1.0 | 0.0 | 1.0 |
| LLELKLKL_21 | 1.0 | 0.0 | 1.0 |
| LLELKLKL_22 | 0.0 | 1.0 | 0.0 |
| LLELKLKL_23 | 1.0 | 0.0 | 1.0 |
| LLELKLKL_24 | 1.0 | 0.0 | 1.0 |
| LLELKLKL_25 | 0.0 | 1.0 | 0.0 |
| LLELKLKL_26 | 0.0 | 1.0 | 0.0 |
| LLELKLKL_27 | 0.0 | 1.0 | 0.0 |
| LLELKLKL_28 | 0.0 | 1.0 | 0.0 |
| LLELKLKL_29 | 0.0 | 1.0 | 0.0 |
| LLELKLKL_30 | 0.0 | 1.0 | 0.0 |
| LLELKLKL_31 | 0.0 | 1.0 | 0.0 |
| LLELKLKL_32 | 0.0 | 1.0 | 0.0 |
| LLELKLKL_33 | 0.0 | 1.0 | 0.0 |
| LLELKLKL_34 | 0.0 | 1.0 | 0.0 |
| LLELKLKL_35 | 0.0 | 1.0 | 0.0 |
| LLELKLKL_36 | 0.0 | 1.0 | 0.0 |
| LLELKLKL_37 | 0.0 | 1.0 | 0.0 |
| LLELKLKL_38 | 0.0 | 1.0 | 0.0 |
| LLELKLKL_39 | 0.0 | 1.0 | 0.0 |
| LLELKLKL_40 | 0.0 | 1.0 | 0.0 |
| LLELKLKL_41 | 0.0 | 1.0 | 0.0 |
| LLELKLKL_42 | 0.0 | 1.0 | 0.0 |
| LLELKLKL_43 | 0.0 | 1.0 | 0.0 |
| LLELKLKL_44 | 0.0 | 1.0 | 0.0 |
| LLELKLKL_45 | 0.0 | 1.0 | 0.0 |
| LLELKLKL_46 | 0.0 | 1.0 | 0.0 |
| LLELKLKL_47 | 0.0 | 1.0 | 0.0 |
| LLELKLKL_48 | 0.0 | 1.0 | 0.0 |
| LLELKLKL_49 | 0.0 | 1.0 | 0.0 |
| LLELKLKL_50 | 0.0 | 1.0 | 0.0 |
| LLELKLKL_51 | 0.0 | 1.0 | 0.0 |
| LLELKLKL_52 | 0.0 | 1.0 | 0.0 |
| LLELKLKL_53 | 0.0 | 1.0 | 0.0 |
| LLELKLKL_54 | 0.0 | 1.0 | 0.0 |
| LLELKLKL_55 | 0.0 | 1.0 | 0.0 |
| LLELKLKL_56 | 0.0 | 1.0 | 0.0 |
| LLELKLKL_57 | 0.0 | 1.0 | 0.0 |
| LLELKLKL_58 | 0.0 | 1.0 | 0.0 |
| LLELKLKL_59 | 0.0 | 1.0 | 0.0 |
| LLELKLKL_60 | 0.0 | 1.0 | 0.0 |
| LLELKLKL_61 | 0.0 | 1.0 | 0.0 |
| LLELKLKL_62 | 0.0 | 1.0 | 0.0 |
| LLELKLKL_63 | 1.0 | 0.0 | 1.0 |
| LLELKLKL_64 | 0.0 | 1.0 | 0.0 |
| LLELKLKL_65 | 0.0 | 1.0 | 0.0 |
| LLELKLKL_66 | 0.0 | 1.0 | 0.0 |
| LLELKLKL_67 | 0.0 | 1.0 | 0.0 |
| LLELKLKL_68 | 0.0 | 1.0 | 0.0 |
| LLELKLKL_69 | 0.0 | 1.0 | 0.0 |
| LLELKLKL_70 | 0.0 | 1.0 | 0.0 |
| LLELKLKL_71 | 0.0 | 1.0 | 0.0 |
| LLELKLKL_72 | 0.0 | 1.0 | 0.0 |
| LLELKLKL_73 | 0.0 | 1.0 | 0.0 |
| LLELKLKL_74 | 0.0 | 1.0 | 0.0 |
| LLELKLKL_75 | 0.0 | 1.0 | 0.0 |
| LLELKLKL_76 | 0.0 | 1.0 | 0.0 |
| LLELKLKL_77 | 0.0 | 1.0 | 0.0 |
| LLELKLKL_78 | 0.0 | 1.0 | 0.0 |
| LLELKLKL_79 | 1.0 | 0.0 | 1.0 |
| LLELKLKL_80 | 0.0 | 1.0 | 0.0 |
| LLELKLKL_81 | 1.0 | 0.0 | 1.0 |
| LLELKLKL_82 | 1.0 | 0.0 | 1.0 |
| LLELKLKL_83 | 0.0 | 1.0 | 0.0 |
| LLELKLKL_84 | 0.0 | 1.0 | 0.0 |
| LLELKLKL_85 | 0.0 | 1.0 | 0.0 |
| LLELKLKL_86 | 1.0 | 0.0 | 1.0 |
| LLELKLKL_87 | 0.0 | 1.0 | 0.0 |
| LLELKLKL_88 | 0.0 | 1.0 | 0.0 |
| LLELKLKL_89 | 0.0 | 1.0 | 0.0 |
| LLELKLKL_90 | 1.0 | 0.0 | 1.0 |
| LLELKLKL_91 | 1.0 | 0.0 | 1.0 |
| LLELKLKL_92 | 0.0 | 1.0 | 0.0 |
| LLELKLKL_93 | 1.0 | 0.0 | 1.0 |
| LLELKLKL_94 | 1.0 | 0.0 | 1.0 |
| LLELKLKL_95 | 1.0 | 0.0 | 1.0 |
| LLELKLKL_96 | 0.0 | 1.0 | 0.0 |
| LLELKLKL_98 | 1.0 | 0.0 | 1.0 |
| LLELKLKL_99 | 0.0 | 1.0 | 0.0 |
| LLELKLKL_100 | 0.0 | 1.0 | 0.0 |
| LLELKLKL_101 | 1.0 | 0.0 | 1.0 |
| LLELKLKL_102 | 1.0 | 0.0 | 1.0 |
| LLELKLKL_103 | 0.0 | 1.0 | 0.0 |
| LLELKLKL_104 | 1.0 | 0.0 | 1.0 |
| LLELKLKL_105 | 0.0 | 1.0 | 0.0 |
| LLELKLKL_106 | 0.0 | 1.0 | 0.0 |
| LLELKLKL_107 | 1.0 | 0.0 | 1.0 |
| LLELKLKL_108 | 0.0 | 1.0 | 0.0 |
| LLELKLKL_109 | 1.0 | 0.0 | 1.0 |
| LLELKLKL_110 | 0.0 | 1.0 | 0.0 |
| LLELKLKL_111 | 0.0 | 1.0 | 0.0 |
| LLELKLKL_112 | 1.0 | 0.0 | 1.0 |
| LLELKLKL_113 | 0.0 | 1.0 | 0.0 |
| LLELKLKL_114 | 0.0 | 1.0 | 0.0 |
| LLELKLKL_115 | 1.0 | 0.0 | 1.0 |
| LLELKLKL_116 | 1.0 | 0.0 | 1.0 |
| LLELKLKL_117 | 1.0 | 0.0 | 1.0 |
| LLELKLKL_118 | 1.0 | 0.0 | 1.0 |
| LLELKLKL_119 | 1.0 | 0.0 | 1.0 |
| LLELKLKL_120 | 1.0 | 0.0 | 1.0 |
| LLELKLKL_121 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LLELKLKL_32 | 13238 | 20782 | False | Siphoviridae | VOG7238, |
Phigaro v2.4.0 (Database: Jan. 2024 release)