Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CIOLONCB_18 | 21443 | 23368 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| CIOLONCB_3 | 119 | 1009 | CblA-1 | ARO:3002999 | CblA-1 | 99.66 | 100.00 | GQ343019.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CIOLONCB_18 | 21443 | 23368 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CIOLONCB_3 | 119 | 1006 | cblA | CblA family class A beta-lactamase | BLASTX | 99.66 | 100.00 | WP_005827792.1 |
| CIOLONCB_18 | 21443 | 23365 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CIOLONCB_1 | 0.0 | 1.0 | 0.0 |
| CIOLONCB_2 | 0.0 | 1.0 | 0.0 |
| CIOLONCB_3 | 0.0 | 1.0 | 0.0 |
| CIOLONCB_4 | 0.0 | 1.0 | 0.0 |
| CIOLONCB_5 | 0.0 | 1.0 | 0.0 |
| CIOLONCB_6 | 0.0 | 1.0 | 0.0 |
| CIOLONCB_7 | 0.0 | 1.0 | 0.0 |
| CIOLONCB_8 | 0.0 | 1.0 | 0.0 |
| CIOLONCB_9 | 0.0 | 1.0 | 0.0 |
| CIOLONCB_10 | 0.0 | 1.0 | 0.0 |
| CIOLONCB_11 | 0.0 | 1.0 | 0.0 |
| CIOLONCB_12 | 0.0 | 1.0 | 0.0 |
| CIOLONCB_13 | 1.0 | 0.0 | 1.0 |
| CIOLONCB_14 | 0.0 | 1.0 | 0.0 |
| CIOLONCB_15 | 0.0 | 1.0 | 0.0 |
| CIOLONCB_16 | 0.0 | 1.0 | 0.0 |
| CIOLONCB_17 | 0.0 | 1.0 | 0.0 |
| CIOLONCB_18 | 0.0 | 1.0 | 0.0 |
| CIOLONCB_19 | 0.0 | 1.0 | 0.0 |
| CIOLONCB_20 | 0.0 | 1.0 | 0.0 |
| CIOLONCB_21 | 0.0 | 1.0 | 0.0 |
| CIOLONCB_22 | 0.0 | 1.0 | 0.0 |
| CIOLONCB_23 | 0.0 | 1.0 | 0.0 |
| CIOLONCB_24 | 0.0 | 1.0 | 0.0 |
| CIOLONCB_25 | 0.0 | 1.0 | 0.0 |
| CIOLONCB_26 | 1.0 | 0.0 | 1.0 |
| CIOLONCB_27 | 1.0 | 0.0 | 1.0 |
| CIOLONCB_28 | 0.0 | 1.0 | 0.0 |
| CIOLONCB_29 | 0.0 | 1.0 | 0.0 |
| CIOLONCB_30 | 0.0 | 1.0 | 0.0 |
| CIOLONCB_31 | 0.0 | 1.0 | 0.0 |
| CIOLONCB_32 | 1.0 | 0.0 | 1.0 |
| CIOLONCB_33 | 0.0 | 1.0 | 0.0 |
| CIOLONCB_34 | 0.0 | 1.0 | 0.0 |
| CIOLONCB_35 | 1.0 | 0.0 | 1.0 |
| CIOLONCB_36 | 1.0 | 0.0 | 1.0 |
| CIOLONCB_37 | 1.0 | 0.0 | 1.0 |
| CIOLONCB_38 | 1.0 | 0.0 | 1.0 |
| CIOLONCB_39 | 1.0 | 0.0 | 1.0 |
| CIOLONCB_40 | 0.0 | 1.0 | 0.0 |
| CIOLONCB_42 | 1.0 | 0.0 | 1.0 |
| CIOLONCB_43 | 1.0 | 0.0 | 1.0 |
| CIOLONCB_44 | 0.0 | 1.0 | 0.0 |
| CIOLONCB_45 | 0.0 | 1.0 | 0.0 |
| CIOLONCB_46 | 1.0 | 0.0 | 1.0 |
| CIOLONCB_47 | 0.0 | 1.0 | 0.0 |
| CIOLONCB_48 | 1.0 | 0.0 | 1.0 |
| CIOLONCB_49 | 1.0 | 0.0 | 1.0 |
| CIOLONCB_50 | 0.0 | 1.0 | 0.0 |
| CIOLONCB_51 | 1.0 | 0.0 | 1.0 |
| CIOLONCB_52 | 1.0 | 0.0 | 1.0 |
| CIOLONCB_53 | 1.0 | 0.0 | 1.0 |
| CIOLONCB_54 | 0.0 | 1.0 | 0.0 |
| CIOLONCB_55 | 0.0 | 1.0 | 0.0 |
| CIOLONCB_56 | 1.0 | 0.0 | 1.0 |
| CIOLONCB_57 | 0.0 | 1.0 | 0.0 |
| CIOLONCB_58 | 0.0 | 1.0 | 0.0 |
| CIOLONCB_59 | 0.0 | 1.0 | 0.0 |
| CIOLONCB_60 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CIOLONCB_44 | 243280 | 257249 | False | Unknown | VOG0083, |
Phigaro v2.4.0 (Database: Jan. 2024 release)