Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LKEHDPAK_22 | 450827 | 451792 | CfxA2 | ARO:3003002 | CfxA2 | 99.07 | 100.00 | AF118110.1 |
| LKEHDPAK_55 | 66332 | 67222 | CblA-1 | ARO:3002999 | CblA-1 | 99.66 | 100.00 | GQ343019.1 |
| LKEHDPAK_81 | 3 | 1289 | tet(Q) | ARO:3000191 | tet(Q) | 96.04 | 65.30 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LKEHDPAK_22 | 450827 | 451792 | cfxA3 | Ampicillin | 99.38 | 100.00 | AF472622 |
| LKEHDPAK_22 | 450827 | 451792 | cfxA4 | Unknown Beta-lactam | 99.38 | 100.00 | AY769933 |
| LKEHDPAK_22 | 450827 | 451792 | cfxA5 | Unknown Beta-lactam | 99.38 | 100.00 | AY769934 |
| LKEHDPAK_22 | 450827 | 451792 | cfxA | Cefoxitin, Ampicillin | 99.38 | 100.00 | U38243 |
| LKEHDPAK_81 | 1 | 1290 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 98.45 | 66.98 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LKEHDPAK_55 | 66332 | 67219 | cblA | CblA family class A beta-lactamase | BLASTX | 99.66 | 100.00 | WP_005827792.1 |
| LKEHDPAK_22 | 450830 | 451792 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 99.07 | 100.00 | WP_004339683.1 |
| LKEHDPAK_81 | 3 | 1289 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | PARTIAL_CONTIG_ENDX | 98.37 | 66.93 | WP_004293868.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LKEHDPAK_1 | 0.0 | 1.0 | 0.0 |
| LKEHDPAK_2 | 0.0 | 1.0 | 0.0 |
| LKEHDPAK_3 | 0.0 | 1.0 | 0.0 |
| LKEHDPAK_4 | 0.0 | 1.0 | 0.0 |
| LKEHDPAK_5 | 0.0 | 1.0 | 0.0 |
| LKEHDPAK_6 | 0.0 | 1.0 | 0.0 |
| LKEHDPAK_7 | 0.0 | 1.0 | 0.0 |
| LKEHDPAK_8 | 0.0 | 1.0 | 0.0 |
| LKEHDPAK_9 | 0.0 | 1.0 | 0.0 |
| LKEHDPAK_10 | 0.0 | 1.0 | 0.0 |
| LKEHDPAK_11 | 0.0 | 1.0 | 0.0 |
| LKEHDPAK_12 | 0.0 | 1.0 | 0.0 |
| LKEHDPAK_13 | 0.0 | 1.0 | 0.0 |
| LKEHDPAK_14 | 0.0 | 1.0 | 0.0 |
| LKEHDPAK_15 | 0.0 | 1.0 | 0.0 |
| LKEHDPAK_16 | 0.0 | 1.0 | 0.0 |
| LKEHDPAK_17 | 0.0 | 1.0 | 0.0 |
| LKEHDPAK_18 | 0.0 | 1.0 | 0.0 |
| LKEHDPAK_19 | 0.0 | 1.0 | 0.0 |
| LKEHDPAK_20 | 0.0 | 1.0 | 0.0 |
| LKEHDPAK_21 | 0.0 | 1.0 | 0.0 |
| LKEHDPAK_22 | 0.0 | 1.0 | 0.0 |
| LKEHDPAK_23 | 0.0 | 1.0 | 0.0 |
| LKEHDPAK_24 | 0.0 | 1.0 | 0.0 |
| LKEHDPAK_25 | 0.0 | 1.0 | 0.0 |
| LKEHDPAK_26 | 0.0 | 1.0 | 0.0 |
| LKEHDPAK_27 | 0.0 | 1.0 | 0.0 |
| LKEHDPAK_28 | 0.0 | 1.0 | 0.0 |
| LKEHDPAK_29 | 0.0 | 1.0 | 0.0 |
| LKEHDPAK_30 | 0.0 | 1.0 | 0.0 |
| LKEHDPAK_31 | 0.0 | 1.0 | 0.0 |
| LKEHDPAK_32 | 0.0 | 1.0 | 0.0 |
| LKEHDPAK_33 | 0.0 | 1.0 | 0.0 |
| LKEHDPAK_34 | 0.0 | 1.0 | 0.0 |
| LKEHDPAK_35 | 0.0 | 1.0 | 0.0 |
| LKEHDPAK_36 | 0.0 | 1.0 | 0.0 |
| LKEHDPAK_37 | 0.0 | 1.0 | 0.0 |
| LKEHDPAK_38 | 0.0 | 1.0 | 0.0 |
| LKEHDPAK_39 | 0.0 | 1.0 | 0.0 |
| LKEHDPAK_40 | 0.0 | 1.0 | 0.0 |
| LKEHDPAK_41 | 1.0 | 0.0 | 1.0 |
| LKEHDPAK_42 | 1.0 | 0.0 | 1.0 |
| LKEHDPAK_43 | 1.0 | 0.0 | 1.0 |
| LKEHDPAK_44 | 0.0 | 1.0 | 0.0 |
| LKEHDPAK_45 | 0.0 | 1.0 | 0.0 |
| LKEHDPAK_46 | 1.0 | 0.0 | 1.0 |
| LKEHDPAK_47 | 0.0 | 1.0 | 0.0 |
| LKEHDPAK_48 | 1.0 | 0.0 | 1.0 |
| LKEHDPAK_49 | 0.0 | 1.0 | 0.0 |
| LKEHDPAK_51 | 1.0 | 0.0 | 1.0 |
| LKEHDPAK_52 | 0.0 | 1.0 | 0.0 |
| LKEHDPAK_53 | 1.0 | 0.0 | 1.0 |
| LKEHDPAK_54 | 1.0 | 0.0 | 1.0 |
| LKEHDPAK_55 | 0.0 | 1.0 | 0.0 |
| LKEHDPAK_56 | 1.0 | 0.0 | 1.0 |
| LKEHDPAK_57 | 0.0 | 1.0 | 0.0 |
| LKEHDPAK_58 | 0.0 | 1.0 | 0.0 |
| LKEHDPAK_59 | 0.0 | 1.0 | 0.0 |
| LKEHDPAK_60 | 1.0 | 0.0 | 1.0 |
| LKEHDPAK_61 | 1.0 | 0.0 | 1.0 |
| LKEHDPAK_62 | 0.0 | 1.0 | 0.0 |
| LKEHDPAK_63 | 0.0 | 1.0 | 0.0 |
| LKEHDPAK_64 | 1.0 | 0.0 | 1.0 |
| LKEHDPAK_65 | 0.0 | 1.0 | 0.0 |
| LKEHDPAK_66 | 0.0 | 1.0 | 0.0 |
| LKEHDPAK_68 | 0.0 | 1.0 | 0.0 |
| LKEHDPAK_69 | 1.0 | 0.0 | 1.0 |
| LKEHDPAK_70 | 0.0 | 1.0 | 0.0 |
| LKEHDPAK_71 | 1.0 | 0.0 | 1.0 |
| LKEHDPAK_72 | 0.0 | 1.0 | 0.0 |
| LKEHDPAK_73 | 1.0 | 0.0 | 1.0 |
| LKEHDPAK_74 | 1.0 | 0.0 | 1.0 |
| LKEHDPAK_75 | 1.0 | 0.0 | 1.0 |
| LKEHDPAK_76 | 1.0 | 0.0 | 1.0 |
| LKEHDPAK_77 | 0.0 | 1.0 | 0.0 |
| LKEHDPAK_78 | 1.0 | 0.0 | 1.0 |
| LKEHDPAK_79 | 1.0 | 0.0 | 1.0 |
| LKEHDPAK_80 | 1.0 | 0.0 | 1.0 |
| LKEHDPAK_81 | 1.0 | 0.0 | 1.0 |
| LKEHDPAK_82 | 0.0 | 1.0 | 0.0 |
| LKEHDPAK_83 | 1.0 | 0.0 | 1.0 |
| LKEHDPAK_84 | 1.0 | 0.0 | 1.0 |
| LKEHDPAK_85 | 1.0 | 0.0 | 1.0 |
| LKEHDPAK_86 | 1.0 | 0.0 | 1.0 |
| LKEHDPAK_87 | 0.0 | 1.0 | 0.0 |
| LKEHDPAK_88 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LKEHDPAK_8 | 65502 | 77097 | False | Myoviridae | VOG10904, |
| LKEHDPAK_15 | 45468 | 57459 | False | Unknown | VOG0572, |
Phigaro v2.4.0 (Database: Jan. 2024 release)