Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NAGCIGBE_33 | 26680 | 28654 | tet(Q) | ARO:3000191 | tet(Q) | 100.00 | 97.56 | Z21523.1 |
| NAGCIGBE_21 | 137 | 1105 | CfxA2 | ARO:3003002 | CfxA2 | 99.69 | 100.31 | AF118110.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| NAGCIGBE_33 | 26728 | 28653 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | Z21523 |
| NAGCIGBE_21 | 137 | 1105 | cfxA3 | Ampicillin | 99.59 | 100.00 | AF472622 |
| NAGCIGBE_21 | 137 | 1105 | cfxA4 | Unknown Beta-lactam | 99.59 | 100.00 | AY769933 |
| NAGCIGBE_21 | 137 | 1105 | cfxA5 | Unknown Beta-lactam | 99.59 | 100.00 | AY769934 |
| NAGCIGBE_21 | 137 | 1105 | cfxA | Cefoxitin, Ampicillin | 99.59 | 100.00 | U38243 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NAGCIGBE_33 | 26728 | 28650 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_002560998.1 |
| NAGCIGBE_21 | 137 | 1102 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 99.69 | 100.00 | WP_004339683.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NAGCIGBE_1 | 0.0 | 1.0 | 0.0 |
| NAGCIGBE_2 | 0.0 | 1.0 | 0.0 |
| NAGCIGBE_3 | 0.0 | 1.0 | 0.0 |
| NAGCIGBE_4 | 0.0 | 1.0 | 0.0 |
| NAGCIGBE_5 | 0.0 | 1.0 | 0.0 |
| NAGCIGBE_6 | 0.0 | 1.0 | 0.0 |
| NAGCIGBE_7 | 0.0 | 1.0 | 0.0 |
| NAGCIGBE_8 | 0.0 | 1.0 | 0.0 |
| NAGCIGBE_9 | 0.0 | 1.0 | 0.0 |
| NAGCIGBE_10 | 0.0 | 1.0 | 0.0 |
| NAGCIGBE_11 | 0.0 | 1.0 | 0.0 |
| NAGCIGBE_12 | 0.0 | 1.0 | 0.0 |
| NAGCIGBE_13 | 0.0 | 1.0 | 0.0 |
| NAGCIGBE_14 | 0.0 | 1.0 | 0.0 |
| NAGCIGBE_15 | 0.0 | 1.0 | 0.0 |
| NAGCIGBE_16 | 0.0 | 1.0 | 0.0 |
| NAGCIGBE_17 | 0.0 | 1.0 | 0.0 |
| NAGCIGBE_18 | 0.0 | 1.0 | 0.0 |
| NAGCIGBE_19 | 0.0 | 1.0 | 0.0 |
| NAGCIGBE_20 | 0.0 | 1.0 | 0.0 |
| NAGCIGBE_21 | 0.0 | 1.0 | 0.0 |
| NAGCIGBE_22 | 0.0 | 1.0 | 0.0 |
| NAGCIGBE_23 | 0.0 | 1.0 | 0.0 |
| NAGCIGBE_24 | 0.0 | 1.0 | 0.0 |
| NAGCIGBE_25 | 0.0 | 1.0 | 0.0 |
| NAGCIGBE_26 | 0.0 | 1.0 | 0.0 |
| NAGCIGBE_27 | 0.0 | 1.0 | 0.0 |
| NAGCIGBE_28 | 0.0 | 1.0 | 0.0 |
| NAGCIGBE_29 | 0.0 | 1.0 | 0.0 |
| NAGCIGBE_30 | 0.0 | 1.0 | 0.0 |
| NAGCIGBE_31 | 0.0 | 1.0 | 0.0 |
| NAGCIGBE_32 | 0.0 | 1.0 | 0.0 |
| NAGCIGBE_33 | 0.0 | 1.0 | 0.0 |
| NAGCIGBE_34 | 0.0 | 1.0 | 0.0 |
| NAGCIGBE_35 | 0.0 | 1.0 | 0.0 |
| NAGCIGBE_36 | 0.0 | 1.0 | 0.0 |
| NAGCIGBE_37 | 0.0 | 1.0 | 0.0 |
| NAGCIGBE_38 | 0.0 | 1.0 | 0.0 |
| NAGCIGBE_39 | 0.0 | 1.0 | 0.0 |
| NAGCIGBE_40 | 0.0 | 1.0 | 0.0 |
| NAGCIGBE_41 | 0.0 | 1.0 | 0.0 |
| NAGCIGBE_42 | 0.0 | 1.0 | 0.0 |
| NAGCIGBE_43 | 0.0 | 1.0 | 0.0 |
| NAGCIGBE_44 | 0.0 | 1.0 | 0.0 |
| NAGCIGBE_45 | 0.0 | 1.0 | 0.0 |
| NAGCIGBE_46 | 0.0 | 1.0 | 0.0 |
| NAGCIGBE_47 | 0.0 | 1.0 | 0.0 |
| NAGCIGBE_48 | 0.0 | 1.0 | 0.0 |
| NAGCIGBE_49 | 0.0 | 1.0 | 0.0 |
| NAGCIGBE_50 | 0.0 | 1.0 | 0.0 |
| NAGCIGBE_51 | 0.0 | 1.0 | 0.0 |
| NAGCIGBE_52 | 0.0 | 1.0 | 0.0 |
| NAGCIGBE_53 | 1.0 | 0.0 | 1.0 |
| NAGCIGBE_54 | 0.0 | 1.0 | 0.0 |
| NAGCIGBE_55 | 0.0 | 1.0 | 0.0 |
| NAGCIGBE_56 | 1.0 | 0.0 | 1.0 |
| NAGCIGBE_57 | 0.0 | 1.0 | 0.0 |
| NAGCIGBE_58 | 0.0 | 1.0 | 0.0 |
| NAGCIGBE_59 | 0.0 | 1.0 | 0.0 |
| NAGCIGBE_60 | 0.0 | 1.0 | 0.0 |
| NAGCIGBE_61 | 0.0 | 1.0 | 0.0 |
| NAGCIGBE_62 | 0.0 | 1.0 | 0.0 |
| NAGCIGBE_63 | 0.0 | 1.0 | 0.0 |
| NAGCIGBE_64 | 0.0 | 1.0 | 0.0 |
| NAGCIGBE_65 | 0.0 | 1.0 | 0.0 |
| NAGCIGBE_66 | 0.0 | 1.0 | 0.0 |
| NAGCIGBE_67 | 0.0 | 1.0 | 0.0 |
| NAGCIGBE_68 | 0.0 | 1.0 | 0.0 |
| NAGCIGBE_69 | 0.0 | 1.0 | 0.0 |
| NAGCIGBE_70 | 0.0 | 1.0 | 0.0 |
| NAGCIGBE_71 | 0.0 | 1.0 | 0.0 |
| NAGCIGBE_72 | 0.0 | 1.0 | 0.0 |
| NAGCIGBE_73 | 0.0 | 1.0 | 0.0 |
| NAGCIGBE_74 | 1.0 | 0.0 | 1.0 |
| NAGCIGBE_75 | 0.0 | 1.0 | 0.0 |
| NAGCIGBE_76 | 1.0 | 0.0 | 1.0 |
| NAGCIGBE_77 | 0.0 | 1.0 | 0.0 |
| NAGCIGBE_79 | 1.0 | 0.0 | 1.0 |
| NAGCIGBE_80 | 1.0 | 0.0 | 1.0 |
| NAGCIGBE_81 | 0.0 | 1.0 | 0.0 |
| NAGCIGBE_82 | 0.0 | 1.0 | 0.0 |
| NAGCIGBE_83 | 1.0 | 0.0 | 1.0 |
| NAGCIGBE_84 | 1.0 | 0.0 | 1.0 |
| NAGCIGBE_85 | 1.0 | 0.0 | 1.0 |
| NAGCIGBE_86 | 1.0 | 0.0 | 1.0 |
| NAGCIGBE_87 | 0.0 | 1.0 | 0.0 |
| NAGCIGBE_88 | 0.0 | 1.0 | 0.0 |
| NAGCIGBE_89 | 0.0 | 1.0 | 0.0 |
| NAGCIGBE_90 | 1.0 | 0.0 | 1.0 |
| NAGCIGBE_91 | 1.0 | 0.0 | 1.0 |
| NAGCIGBE_92 | 1.0 | 0.0 | 1.0 |
| NAGCIGBE_93 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NAGCIGBE_21 | 52519 | 55721 | False | Unknown | VOG4566, |
| NAGCIGBE_46 | 11461 | 22474 | False | Siphoviridae | VOG7238, |
| NAGCIGBE_55 | 43426 | 50730 | True | Unknown | VOG4585, |
Phigaro v2.4.0 (Database: Jan. 2024 release)