Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LBODIHNH_19 | 72229 | 73194 | CfxA3 | ARO:3003003 | CfxA3 | 100.00 | 100.00 | AF472622.2 |
| LBODIHNH_51 | 20070 | 20807 | ErmB | ARO:3000375 | ErmB | 97.96 | 98.79 | AF242872.1 |
| LBODIHNH_50 | 4338 | 6263 | tet(Q) | ARO:3000191 | tet(Q) | 89.08 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LBODIHNH_51 | 16865 | 17731 | ant(6)-Ia | Streptomycin | 100.00 | 100.00 | KF864551 |
| LBODIHNH_19 | 72229 | 73194 | cfxA3 | Ampicillin | 100.00 | 100.00 | AF472622 |
| LBODIHNH_51 | 20070 | 20807 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.73 | 100.00 | U18931 |
| LBODIHNH_50 | 4338 | 6263 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 90.45 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LBODIHNH_51 | 16868 | 17731 | aadE | aminoglycoside 6-adenylyltransferase AadE | EXACTX | 100.00 | 100.00 | WP_001255868.1 |
| LBODIHNH_19 | 72229 | 73191 | cfxA3 | extended-spectrum class A beta-lactamase CfxA3 | EXACTX | 100.00 | 100.00 | WP_004348227.1 |
| LBODIHNH_51 | 20073 | 20807 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | BLASTX | 99.18 | 100.00 | WP_002292226.1 |
| LBODIHNH_50 | 4338 | 6260 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.55 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LBODIHNH_1 | 0.0 | 1.0 | 0.0 |
| LBODIHNH_2 | 0.0 | 1.0 | 0.0 |
| LBODIHNH_3 | 0.0 | 1.0 | 0.0 |
| LBODIHNH_4 | 0.0 | 1.0 | 0.0 |
| LBODIHNH_5 | 0.0 | 1.0 | 0.0 |
| LBODIHNH_6 | 0.0 | 1.0 | 0.0 |
| LBODIHNH_7 | 0.0 | 1.0 | 0.0 |
| LBODIHNH_8 | 0.0 | 1.0 | 0.0 |
| LBODIHNH_9 | 0.0 | 1.0 | 0.0 |
| LBODIHNH_10 | 0.0 | 1.0 | 0.0 |
| LBODIHNH_11 | 0.0 | 1.0 | 0.0 |
| LBODIHNH_12 | 0.0 | 1.0 | 0.0 |
| LBODIHNH_13 | 0.0 | 1.0 | 0.0 |
| LBODIHNH_14 | 0.0 | 1.0 | 0.0 |
| LBODIHNH_15 | 0.0 | 1.0 | 0.0 |
| LBODIHNH_16 | 0.0 | 1.0 | 0.0 |
| LBODIHNH_17 | 0.0 | 1.0 | 0.0 |
| LBODIHNH_18 | 0.0 | 1.0 | 0.0 |
| LBODIHNH_19 | 1.0 | 0.0 | 1.0 |
| LBODIHNH_20 | 0.0 | 1.0 | 0.0 |
| LBODIHNH_21 | 0.0 | 1.0 | 0.0 |
| LBODIHNH_22 | 0.0 | 1.0 | 0.0 |
| LBODIHNH_23 | 0.0 | 1.0 | 0.0 |
| LBODIHNH_24 | 0.0 | 1.0 | 0.0 |
| LBODIHNH_25 | 0.0 | 1.0 | 0.0 |
| LBODIHNH_26 | 0.0 | 1.0 | 0.0 |
| LBODIHNH_27 | 0.0 | 1.0 | 0.0 |
| LBODIHNH_28 | 0.0 | 1.0 | 0.0 |
| LBODIHNH_29 | 0.0 | 1.0 | 0.0 |
| LBODIHNH_30 | 0.0 | 1.0 | 0.0 |
| LBODIHNH_31 | 0.0 | 1.0 | 0.0 |
| LBODIHNH_32 | 0.0 | 1.0 | 0.0 |
| LBODIHNH_33 | 0.0 | 1.0 | 0.0 |
| LBODIHNH_34 | 0.0 | 1.0 | 0.0 |
| LBODIHNH_35 | 0.0 | 1.0 | 0.0 |
| LBODIHNH_36 | 0.0 | 1.0 | 0.0 |
| LBODIHNH_37 | 0.0 | 1.0 | 0.0 |
| LBODIHNH_38 | 0.0 | 1.0 | 0.0 |
| LBODIHNH_39 | 0.0 | 1.0 | 0.0 |
| LBODIHNH_40 | 0.0 | 1.0 | 0.0 |
| LBODIHNH_41 | 0.0 | 1.0 | 0.0 |
| LBODIHNH_42 | 1.0 | 0.0 | 1.0 |
| LBODIHNH_43 | 0.0 | 1.0 | 0.0 |
| LBODIHNH_44 | 0.0 | 1.0 | 0.0 |
| LBODIHNH_45 | 1.0 | 0.0 | 1.0 |
| LBODIHNH_46 | 0.0 | 1.0 | 0.0 |
| LBODIHNH_47 | 0.0 | 1.0 | 0.0 |
| LBODIHNH_48 | 0.0 | 1.0 | 0.0 |
| LBODIHNH_49 | 0.0 | 1.0 | 0.0 |
| LBODIHNH_50 | 0.0 | 1.0 | 0.0 |
| LBODIHNH_51 | 0.0 | 1.0 | 0.0 |
| LBODIHNH_52 | 0.0 | 1.0 | 0.0 |
| LBODIHNH_53 | 0.0 | 1.0 | 0.0 |
| LBODIHNH_54 | 0.0 | 1.0 | 0.0 |
| LBODIHNH_55 | 0.0 | 1.0 | 0.0 |
| LBODIHNH_56 | 1.0 | 0.0 | 1.0 |
| LBODIHNH_57 | 1.0 | 0.0 | 1.0 |
| LBODIHNH_58 | 0.0 | 1.0 | 0.0 |
| LBODIHNH_59 | 1.0 | 0.0 | 1.0 |
| LBODIHNH_60 | 1.0 | 0.0 | 1.0 |
| LBODIHNH_61 | 0.0 | 1.0 | 0.0 |
| LBODIHNH_62 | 1.0 | 0.0 | 1.0 |
| LBODIHNH_63 | 0.0 | 1.0 | 0.0 |
| LBODIHNH_65 | 1.0 | 0.0 | 1.0 |
| LBODIHNH_66 | 0.0 | 1.0 | 0.0 |
| LBODIHNH_67 | 0.0 | 1.0 | 0.0 |
| LBODIHNH_68 | 1.0 | 0.0 | 1.0 |
| LBODIHNH_69 | 1.0 | 0.0 | 1.0 |
| LBODIHNH_70 | 0.0 | 1.0 | 0.0 |
| LBODIHNH_71 | 0.0 | 1.0 | 0.0 |
| LBODIHNH_72 | 1.0 | 0.0 | 1.0 |
| LBODIHNH_73 | 1.0 | 0.0 | 1.0 |
| LBODIHNH_74 | 0.0 | 1.0 | 0.0 |
| LBODIHNH_75 | 0.0 | 1.0 | 0.0 |
| LBODIHNH_76 | 1.0 | 0.0 | 1.0 |
| LBODIHNH_77 | 0.0 | 1.0 | 0.0 |
| LBODIHNH_78 | 1.0 | 0.0 | 1.0 |
| LBODIHNH_79 | 1.0 | 0.0 | 1.0 |
| LBODIHNH_80 | 0.0 | 1.0 | 0.0 |
| LBODIHNH_81 | 0.0 | 1.0 | 0.0 |
| LBODIHNH_82 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)