Probiotic potential risk score


ARGs VFs PGs PPRS
6006.00

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
LDMLLBNJ_37215203216093CblA-1ARO:3002999CblA-199.66100.00GQ343019.1
LDMLLBNJ_102276923974Mef(En2)ARO:3004659Mef(En2)99.50100.00AF251288.1
LDMLLBNJ_41104512970tet(Q)ARO:3000191tet(Q)97.0497.56Z21523.1
LDMLLBNJ_1362357401tet(X)ARO:3000205tet(X)99.74100.00M37699.1

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
LDMLLBNJ_41104512970tet(Q)Doxycycline, Tetracycline, Minocycline100.00100.00X58717
LDMLLBNJ_1362357401tet(X)Doxycycline, Tetracycline, Minocycline, Tigecycline99.91100.00M37699
LDMLLBNJ_1352276022erm(F)Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S99.3899.38M17808

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
LDMLLBNJ_102399924508lnu(AN2)lincosamide nucleotidyltransferase Lnu(AN2)EXACTX100.00100.00WP_004308783.1
LDMLLBNJ_41104812970tet(Q)tetracycline resistance ribosomal protection protein Tet(Q)EXACTX100.00100.00WP_004293868.1
LDMLLBNJ_1352275901erm(F)23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F)PARTIALX100.0084.59WP_002682030.1
LDMLLBNJ_1362387401tet(X2)tetracycline-inactivating monooxygenase Tet(X2)BLASTX99.74100.00WP_008651082.1
LDMLLBNJ_37215206216093cblACblA family class A beta-lactamaseBLASTX99.66100.00WP_005827792.1
LDMLLBNJ_102276923971mef(En2)macrolide efflux MFS transporter Mef(En2)BLASTX99.50100.00WP_063853729.1

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence factors


Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
No hit found

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

Pathogenic genes


PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
No hit found

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

Plasmid


PlasmidFinder

Query ID Begin End Plasmid Query / Template Identity Accession no.
No hit found

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID Prediction Chromosome Plasmid
LDMLLBNJ_10.01.00.0
LDMLLBNJ_20.01.00.0
LDMLLBNJ_30.01.00.0
LDMLLBNJ_40.01.00.0
LDMLLBNJ_50.01.00.0
LDMLLBNJ_60.01.00.0
LDMLLBNJ_70.01.00.0
LDMLLBNJ_80.01.00.0
LDMLLBNJ_90.01.00.0
LDMLLBNJ_100.01.00.0
LDMLLBNJ_110.01.00.0
LDMLLBNJ_121.00.01.0
LDMLLBNJ_131.00.01.0
LDMLLBNJ_140.01.00.0
LDMLLBNJ_151.00.01.0
LDMLLBNJ_161.00.01.0
LDMLLBNJ_171.00.01.0
LDMLLBNJ_180.01.00.0
LDMLLBNJ_190.01.00.0
LDMLLBNJ_211.00.01.0
LDMLLBNJ_220.01.00.0
LDMLLBNJ_231.00.01.0
LDMLLBNJ_241.00.01.0
LDMLLBNJ_251.00.01.0
LDMLLBNJ_261.00.01.0
LDMLLBNJ_270.01.00.0
LDMLLBNJ_280.01.00.0
LDMLLBNJ_291.00.01.0
LDMLLBNJ_311.00.01.0
LDMLLBNJ_320.01.00.0
LDMLLBNJ_330.01.00.0
LDMLLBNJ_340.01.00.0
LDMLLBNJ_350.01.00.0
LDMLLBNJ_360.01.00.0
LDMLLBNJ_370.01.00.0
LDMLLBNJ_380.01.00.0
LDMLLBNJ_390.01.00.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Prophage


Phigaro

Query ID Begin End Transposable Taxonomy pVOGs
LDMLLBNJ_2205181216486FalseSiphoviridaeVOG3992,
LDMLLBNJ_92602531129FalseUnknownVOG1356,
LDMLLBNJ_11450615462381FalseUnknownVOG4690,
LDMLLBNJ_334682159944FalseUnknownVOG0982,
LDMLLBNJ_34317597330896FalseUnknownVOG0572,

Phigaro v2.4.0 (Database: Jan. 2024 release)


Insertion sequence (IS) elements