Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| INEDMCIG_36 | 245085 | 245975 | CblA-1 | ARO:3002999 | CblA-1 | 99.66 | 100.00 | GQ343019.1 |
| INEDMCIG_9 | 9342 | 11336 | tet(Q) | ARO:3000191 | tet(Q) | 96.33 | 101.07 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| INEDMCIG_9 | 9390 | 11302 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 99.33 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| INEDMCIG_36 | 245088 | 245975 | cblA | CblA family class A beta-lactamase | BLASTX | 99.66 | 100.00 | WP_005827792.1 |
| INEDMCIG_9 | 9390 | 11303 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.37 | 99.53 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| INEDMCIG_1 | 0.0 | 1.0 | 0.0 |
| INEDMCIG_2 | 0.0 | 1.0 | 0.0 |
| INEDMCIG_3 | 0.0 | 1.0 | 0.0 |
| INEDMCIG_4 | 0.0 | 1.0 | 0.0 |
| INEDMCIG_5 | 0.0 | 1.0 | 0.0 |
| INEDMCIG_6 | 0.0 | 1.0 | 0.0 |
| INEDMCIG_7 | 0.0 | 1.0 | 0.0 |
| INEDMCIG_8 | 0.0 | 1.0 | 0.0 |
| INEDMCIG_9 | 0.0 | 1.0 | 0.0 |
| INEDMCIG_10 | 0.0 | 1.0 | 0.0 |
| INEDMCIG_11 | 0.0 | 1.0 | 0.0 |
| INEDMCIG_12 | 0.0 | 1.0 | 0.0 |
| INEDMCIG_13 | 0.0 | 1.0 | 0.0 |
| INEDMCIG_14 | 1.0 | 0.0 | 1.0 |
| INEDMCIG_15 | 0.0 | 1.0 | 0.0 |
| INEDMCIG_16 | 1.0 | 0.0 | 1.0 |
| INEDMCIG_17 | 1.0 | 0.0 | 1.0 |
| INEDMCIG_18 | 0.0 | 1.0 | 0.0 |
| INEDMCIG_19 | 0.0 | 1.0 | 0.0 |
| INEDMCIG_20 | 1.0 | 0.0 | 1.0 |
| INEDMCIG_21 | 1.0 | 0.0 | 1.0 |
| INEDMCIG_22 | 0.0 | 1.0 | 0.0 |
| INEDMCIG_24 | 0.0 | 1.0 | 0.0 |
| INEDMCIG_25 | 0.0 | 1.0 | 0.0 |
| INEDMCIG_26 | 1.0 | 0.0 | 1.0 |
| INEDMCIG_27 | 1.0 | 0.0 | 1.0 |
| INEDMCIG_28 | 1.0 | 0.0 | 1.0 |
| INEDMCIG_29 | 0.0 | 1.0 | 0.0 |
| INEDMCIG_30 | 1.0 | 0.0 | 1.0 |
| INEDMCIG_31 | 1.0 | 0.0 | 1.0 |
| INEDMCIG_32 | 0.0 | 1.0 | 0.0 |
| INEDMCIG_33 | 0.0 | 1.0 | 0.0 |
| INEDMCIG_34 | 0.0 | 1.0 | 0.0 |
| INEDMCIG_35 | 0.0 | 1.0 | 0.0 |
| INEDMCIG_36 | 0.0 | 1.0 | 0.0 |
| INEDMCIG_37 | 0.0 | 1.0 | 0.0 |
| INEDMCIG_38 | 0.0 | 1.0 | 0.0 |
| INEDMCIG_39 | 0.0 | 1.0 | 0.0 |
| INEDMCIG_40 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| INEDMCIG_6 | 88893 | 100348 | False | Myoviridae | VOG3798, |
| INEDMCIG_22 | 475137 | 484880 | False | Myoviridae | VOG0221, |
Phigaro v2.4.0 (Database: Jan. 2024 release)