Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 6 | 0 | 0 | 6.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KCHKKDFM_64 | 188433 | 189323 | CblA-1 | ARO:3002999 | CblA-1 | 100.00 | 100.00 | GQ343019.1 |
| KCHKKDFM_11 | 116578 | 117783 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
| KCHKKDFM_17 | 18108 | 19733 | tet(Q) | ARO:3000191 | tet(Q) | 96.30 | 82.34 | Z21523.1 |
| KCHKKDFM_17 | 6584 | 8086 | tet(Q) | ARO:3000191 | tet(Q) | 96.60 | 76.10 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| KCHKKDFM_17 | 6461 | 8086 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.26 | 84.42 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KCHKKDFM_64 | 188433 | 189320 | cblA | CblA family class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005827792.1 |
| KCHKKDFM_11 | 117808 | 118317 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| KCHKKDFM_11 | 116578 | 117780 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
| KCHKKDFM_17 | 6461 | 8083 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | PARTIALX | 99.08 | 84.40 | WP_063856407.1 |
| KCHKKDFM_17 | 18111 | 19730 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | PARTIALX | 98.52 | 84.24 | WP_063856407.1 |
| KCHKKDFM_26 | 541 | 1380 | estT | macrolide hydrolase EstT | BLASTX | 98.23 | 100.00 | WP_185148407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| KCHKKDFM_1 | 0.0 | 1.0 | 0.0 |
| KCHKKDFM_2 | 0.0 | 1.0 | 0.0 |
| KCHKKDFM_3 | 0.0 | 1.0 | 0.0 |
| KCHKKDFM_4 | 0.0 | 1.0 | 0.0 |
| KCHKKDFM_5 | 0.0 | 1.0 | 0.0 |
| KCHKKDFM_6 | 0.0 | 1.0 | 0.0 |
| KCHKKDFM_7 | 0.0 | 1.0 | 0.0 |
| KCHKKDFM_8 | 0.0 | 1.0 | 0.0 |
| KCHKKDFM_9 | 0.0 | 1.0 | 0.0 |
| KCHKKDFM_10 | 0.0 | 1.0 | 0.0 |
| KCHKKDFM_11 | 0.0 | 1.0 | 0.0 |
| KCHKKDFM_12 | 0.0 | 1.0 | 0.0 |
| KCHKKDFM_13 | 0.0 | 1.0 | 0.0 |
| KCHKKDFM_14 | 0.0 | 1.0 | 0.0 |
| KCHKKDFM_15 | 0.0 | 1.0 | 0.0 |
| KCHKKDFM_16 | 0.0 | 1.0 | 0.0 |
| KCHKKDFM_17 | 1.0 | 0.0 | 1.0 |
| KCHKKDFM_18 | 0.0 | 1.0 | 0.0 |
| KCHKKDFM_19 | 0.0 | 1.0 | 0.0 |
| KCHKKDFM_20 | 0.0 | 1.0 | 0.0 |
| KCHKKDFM_21 | 0.0 | 1.0 | 0.0 |
| KCHKKDFM_22 | 0.0 | 1.0 | 0.0 |
| KCHKKDFM_23 | 1.0 | 0.0 | 1.0 |
| KCHKKDFM_24 | 0.0 | 1.0 | 0.0 |
| KCHKKDFM_25 | 0.0 | 1.0 | 0.0 |
| KCHKKDFM_26 | 1.0 | 0.0 | 1.0 |
| KCHKKDFM_27 | 0.0 | 1.0 | 0.0 |
| KCHKKDFM_28 | 0.0 | 1.0 | 0.0 |
| KCHKKDFM_29 | 0.0 | 1.0 | 0.0 |
| KCHKKDFM_30 | 0.0 | 1.0 | 0.0 |
| KCHKKDFM_31 | 0.0 | 1.0 | 0.0 |
| KCHKKDFM_32 | 1.0 | 0.0 | 1.0 |
| KCHKKDFM_33 | 0.0 | 1.0 | 0.0 |
| KCHKKDFM_34 | 0.0 | 1.0 | 0.0 |
| KCHKKDFM_35 | 0.0 | 1.0 | 0.0 |
| KCHKKDFM_36 | 0.0 | 1.0 | 0.0 |
| KCHKKDFM_37 | 0.0 | 1.0 | 0.0 |
| KCHKKDFM_38 | 1.0 | 0.0 | 1.0 |
| KCHKKDFM_39 | 1.0 | 0.0 | 1.0 |
| KCHKKDFM_40 | 0.0 | 1.0 | 0.0 |
| KCHKKDFM_42 | 1.0 | 0.0 | 1.0 |
| KCHKKDFM_43 | 1.0 | 0.0 | 1.0 |
| KCHKKDFM_44 | 0.0 | 1.0 | 0.0 |
| KCHKKDFM_45 | 1.0 | 0.0 | 1.0 |
| KCHKKDFM_46 | 1.0 | 0.0 | 1.0 |
| KCHKKDFM_47 | 1.0 | 0.0 | 1.0 |
| KCHKKDFM_48 | 1.0 | 0.0 | 1.0 |
| KCHKKDFM_49 | 1.0 | 0.0 | 1.0 |
| KCHKKDFM_50 | 1.0 | 0.0 | 1.0 |
| KCHKKDFM_51 | 1.0 | 0.0 | 1.0 |
| KCHKKDFM_52 | 1.0 | 0.0 | 1.0 |
| KCHKKDFM_53 | 1.0 | 0.0 | 1.0 |
| KCHKKDFM_54 | 1.0 | 0.0 | 1.0 |
| KCHKKDFM_55 | 0.0 | 1.0 | 0.0 |
| KCHKKDFM_56 | 1.0 | 0.0 | 1.0 |
| KCHKKDFM_57 | 1.0 | 0.0 | 1.0 |
| KCHKKDFM_58 | 1.0 | 0.0 | 1.0 |
| KCHKKDFM_59 | 1.0 | 0.0 | 1.0 |
| KCHKKDFM_60 | 1.0 | 0.0 | 1.0 |
| KCHKKDFM_62 | 1.0 | 0.0 | 1.0 |
| KCHKKDFM_63 | 0.0 | 1.0 | 0.0 |
| KCHKKDFM_64 | 0.0 | 1.0 | 0.0 |
| KCHKKDFM_65 | 0.0 | 1.0 | 0.0 |
| KCHKKDFM_66 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| KCHKKDFM_4 | 7061 | 16396 | True | Siphoviridae | VOG0275, |
| KCHKKDFM_11 | 370619 | 382287 | False | Siphoviridae | VOG4624, |
Phigaro v2.4.0 (Database: Jan. 2024 release)