Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 1 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| INDMNLCN_77 | 39918 | 41843 | tet(Q) | ARO:3000191 | tet(Q) | 89.08 | 97.56 | Z21523.1 |
| INDMNLCN_77 | 38831 | 39631 | ErmF | ARO:3000498 | ErmF | 98.50 | 100.00 | M17124.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| INDMNLCN_77 | 38831 | 39631 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
| INDMNLCN_77 | 39918 | 41843 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 90.45 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| INDMNLCN_77 | 38831 | 39628 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
| INDMNLCN_77 | 39918 | 41840 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.55 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| INDMNLCN_33 | 238162 | 239742 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 87.29 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| INDMNLCN_1 | 0.0 | 1.0 | 0.0 |
| INDMNLCN_2 | 0.0 | 1.0 | 0.0 |
| INDMNLCN_3 | 0.0 | 1.0 | 0.0 |
| INDMNLCN_4 | 0.0 | 1.0 | 0.0 |
| INDMNLCN_5 | 0.0 | 1.0 | 0.0 |
| INDMNLCN_6 | 0.0 | 1.0 | 0.0 |
| INDMNLCN_7 | 0.0 | 1.0 | 0.0 |
| INDMNLCN_8 | 0.0 | 1.0 | 0.0 |
| INDMNLCN_9 | 0.0 | 1.0 | 0.0 |
| INDMNLCN_10 | 0.0 | 1.0 | 0.0 |
| INDMNLCN_11 | 0.0 | 1.0 | 0.0 |
| INDMNLCN_12 | 0.0 | 1.0 | 0.0 |
| INDMNLCN_13 | 0.0 | 1.0 | 0.0 |
| INDMNLCN_14 | 0.0 | 1.0 | 0.0 |
| INDMNLCN_15 | 0.0 | 1.0 | 0.0 |
| INDMNLCN_16 | 0.0 | 1.0 | 0.0 |
| INDMNLCN_17 | 0.0 | 1.0 | 0.0 |
| INDMNLCN_18 | 0.0 | 1.0 | 0.0 |
| INDMNLCN_19 | 0.0 | 1.0 | 0.0 |
| INDMNLCN_20 | 0.0 | 1.0 | 0.0 |
| INDMNLCN_21 | 0.0 | 1.0 | 0.0 |
| INDMNLCN_22 | 0.0 | 1.0 | 0.0 |
| INDMNLCN_23 | 0.0 | 1.0 | 0.0 |
| INDMNLCN_24 | 0.0 | 1.0 | 0.0 |
| INDMNLCN_25 | 0.0 | 1.0 | 0.0 |
| INDMNLCN_26 | 0.0 | 1.0 | 0.0 |
| INDMNLCN_27 | 0.0 | 1.0 | 0.0 |
| INDMNLCN_28 | 0.0 | 1.0 | 0.0 |
| INDMNLCN_29 | 0.0 | 1.0 | 0.0 |
| INDMNLCN_30 | 0.0 | 1.0 | 0.0 |
| INDMNLCN_31 | 0.0 | 1.0 | 0.0 |
| INDMNLCN_32 | 0.0 | 1.0 | 0.0 |
| INDMNLCN_33 | 0.0 | 1.0 | 0.0 |
| INDMNLCN_34 | 0.0 | 1.0 | 0.0 |
| INDMNLCN_35 | 0.0 | 1.0 | 0.0 |
| INDMNLCN_36 | 0.0 | 1.0 | 0.0 |
| INDMNLCN_37 | 0.0 | 1.0 | 0.0 |
| INDMNLCN_38 | 0.0 | 1.0 | 0.0 |
| INDMNLCN_39 | 0.0 | 1.0 | 0.0 |
| INDMNLCN_40 | 1.0 | 0.0 | 1.0 |
| INDMNLCN_41 | 1.0 | 0.0 | 1.0 |
| INDMNLCN_42 | 1.0 | 0.0 | 1.0 |
| INDMNLCN_43 | 0.0 | 1.0 | 0.0 |
| INDMNLCN_44 | 0.0 | 1.0 | 0.0 |
| INDMNLCN_45 | 0.0 | 1.0 | 0.0 |
| INDMNLCN_46 | 1.0 | 0.0 | 1.0 |
| INDMNLCN_47 | 1.0 | 0.0 | 1.0 |
| INDMNLCN_48 | 1.0 | 0.0 | 1.0 |
| INDMNLCN_49 | 0.0 | 1.0 | 0.0 |
| INDMNLCN_50 | 1.0 | 0.0 | 1.0 |
| INDMNLCN_52 | 0.0 | 1.0 | 0.0 |
| INDMNLCN_53 | 1.0 | 0.0 | 1.0 |
| INDMNLCN_54 | 1.0 | 0.0 | 1.0 |
| INDMNLCN_55 | 0.0 | 1.0 | 0.0 |
| INDMNLCN_56 | 0.0 | 1.0 | 0.0 |
| INDMNLCN_57 | 0.0 | 1.0 | 0.0 |
| INDMNLCN_58 | 0.0 | 1.0 | 0.0 |
| INDMNLCN_59 | 1.0 | 0.0 | 1.0 |
| INDMNLCN_60 | 0.0 | 1.0 | 0.0 |
| INDMNLCN_61 | 1.0 | 0.0 | 1.0 |
| INDMNLCN_62 | 1.0 | 0.0 | 1.0 |
| INDMNLCN_63 | 1.0 | 0.0 | 1.0 |
| INDMNLCN_64 | 0.0 | 1.0 | 0.0 |
| INDMNLCN_65 | 1.0 | 0.0 | 1.0 |
| INDMNLCN_66 | 0.0 | 1.0 | 0.0 |
| INDMNLCN_67 | 1.0 | 0.0 | 1.0 |
| INDMNLCN_68 | 1.0 | 0.0 | 1.0 |
| INDMNLCN_69 | 0.0 | 1.0 | 0.0 |
| INDMNLCN_70 | 0.0 | 1.0 | 0.0 |
| INDMNLCN_71 | 1.0 | 0.0 | 1.0 |
| INDMNLCN_72 | 1.0 | 0.0 | 1.0 |
| INDMNLCN_73 | 1.0 | 0.0 | 1.0 |
| INDMNLCN_74 | 1.0 | 0.0 | 1.0 |
| INDMNLCN_75 | 1.0 | 0.0 | 1.0 |
| INDMNLCN_76 | 0.0 | 1.0 | 0.0 |
| INDMNLCN_77 | 0.0 | 1.0 | 0.0 |
| INDMNLCN_78 | 1.0 | 0.0 | 1.0 |
| INDMNLCN_79 | 1.0 | 0.0 | 1.0 |
| INDMNLCN_80 | 0.0 | 1.0 | 0.0 |
| INDMNLCN_81 | 0.0 | 1.0 | 0.0 |
| INDMNLCN_82 | 0.0 | 1.0 | 0.0 |
| INDMNLCN_83 | 0.0 | 1.0 | 0.0 |
| INDMNLCN_84 | 1.0 | 0.0 | 1.0 |
| INDMNLCN_85 | 1.0 | 0.0 | 1.0 |
| INDMNLCN_86 | 1.0 | 0.0 | 1.0 |
| INDMNLCN_87 | 0.0 | 1.0 | 0.0 |
| INDMNLCN_88 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| INDMNLCN_55 | 26685 | 36884 | True | Siphoviridae | VOG2703, |
Phigaro v2.4.0 (Database: Jan. 2024 release)