Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 6 | 0 | 0 | 6.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PLOKOHBI_70 | 155266 | 157191 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| PLOKOHBI_37 | 25086 | 26291 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
| PLOKOHBI_109 | 1645 | 2610 | CfxA2 | ARO:3003002 | CfxA2 | 100.00 | 100.00 | AF118110.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PLOKOHBI_109 | 863 | 1573 | cfxA | Cefoxitin, Ampicillin | 100.00 | 73.60 | U38243 |
| PLOKOHBI_109 | 863 | 1573 | cfxA3 | Ampicillin | 100.00 | 73.60 | AF472622 |
| PLOKOHBI_109 | 863 | 1573 | cfxA4 | Unknown Beta-lactam | 100.00 | 73.60 | AY769933 |
| PLOKOHBI_109 | 863 | 1573 | cfxA5 | Unknown Beta-lactam | 100.00 | 73.60 | AY769934 |
| PLOKOHBI_70 | 155266 | 157191 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| PLOKOHBI_92 | 121735 | 122527 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 83.42 | 98.75 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PLOKOHBI_109 | 1645 | 2607 | cfxA | CfxA family broad-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_004339683.1 |
| PLOKOHBI_37 | 26316 | 26825 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| PLOKOHBI_109 | 863 | 1573 | cfxA | CfxA family broad-spectrum class A beta-lactamase | PARTIALX | 100.00 | 73.83 | WP_004339683.1 |
| PLOKOHBI_70 | 155269 | 157191 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| PLOKOHBI_37 | 25086 | 26288 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
| PLOKOHBI_92 | 121731 | 122522 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 80.30 | 99.25 | WP_002682030.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PLOKOHBI_1 | 1.0 | 0.0 | 1.0 |
| PLOKOHBI_2 | 1.0 | 0.0 | 1.0 |
| PLOKOHBI_3 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_4 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_5 | 1.0 | 0.0 | 1.0 |
| PLOKOHBI_6 | 1.0 | 0.0 | 1.0 |
| PLOKOHBI_7 | 1.0 | 0.0 | 1.0 |
| PLOKOHBI_8 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_9 | 1.0 | 0.0 | 1.0 |
| PLOKOHBI_10 | 1.0 | 0.0 | 1.0 |
| PLOKOHBI_11 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_13 | 1.0 | 0.0 | 1.0 |
| PLOKOHBI_14 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_15 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_16 | 1.0 | 0.0 | 1.0 |
| PLOKOHBI_17 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_18 | 1.0 | 0.0 | 1.0 |
| PLOKOHBI_19 | 1.0 | 0.0 | 1.0 |
| PLOKOHBI_20 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_21 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_22 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_23 | 1.0 | 0.0 | 1.0 |
| PLOKOHBI_25 | 1.0 | 0.0 | 1.0 |
| PLOKOHBI_26 | 1.0 | 0.0 | 1.0 |
| PLOKOHBI_27 | 1.0 | 0.0 | 1.0 |
| PLOKOHBI_28 | 1.0 | 0.0 | 1.0 |
| PLOKOHBI_29 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_30 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_31 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_32 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_33 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_34 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_35 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_36 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_37 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_38 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_39 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_40 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_41 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_42 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_43 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_44 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_45 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_46 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_47 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_48 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_49 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_50 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_51 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_52 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_53 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_54 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_55 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_56 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_57 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_58 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_59 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_60 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_61 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_62 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_63 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_64 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_65 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_66 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_67 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_68 | 1.0 | 0.0 | 1.0 |
| PLOKOHBI_69 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_70 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_71 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_72 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_73 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_74 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_75 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_76 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_77 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_78 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_79 | 1.0 | 0.0 | 1.0 |
| PLOKOHBI_80 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_81 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_82 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_83 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_84 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_85 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_86 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_87 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_88 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_89 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_90 | 1.0 | 0.0 | 1.0 |
| PLOKOHBI_91 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_92 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_93 | 1.0 | 0.0 | 1.0 |
| PLOKOHBI_94 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_95 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_96 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_97 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_98 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_99 | 1.0 | 0.0 | 1.0 |
| PLOKOHBI_100 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_101 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_102 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_103 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_104 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_105 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_106 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_107 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_108 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_109 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_110 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_111 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_112 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_113 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_114 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_115 | 1.0 | 0.0 | 1.0 |
| PLOKOHBI_116 | 1.0 | 0.0 | 1.0 |
| PLOKOHBI_117 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_118 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_119 | 1.0 | 0.0 | 1.0 |
| PLOKOHBI_121 | 0.0 | 1.0 | 0.0 |
| PLOKOHBI_122 | 1.0 | 0.0 | 1.0 |
| PLOKOHBI_123 | 1.0 | 0.0 | 1.0 |
| PLOKOHBI_124 | 1.0 | 0.0 | 1.0 |
| PLOKOHBI_125 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PLOKOHBI_48 | 257463 | 268315 | False | Unknown | VOG4548, |
| PLOKOHBI_114 | 38510 | 49492 | False | Siphoviridae | VOG0749, |
Phigaro v2.4.0 (Database: Jan. 2024 release)