Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 1 | 1.41 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EBAGMALI_31 | 716 | 2641 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| EBAGMALI_31 | 716 | 2641 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EBAGMALI_31 | 716 | 2638 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| EBAGMALI_9 | 61389 | 62969 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| EBAGMALI_1 | 0.0 | 1.0 | 0.0 |
| EBAGMALI_2 | 0.0 | 1.0 | 0.0 |
| EBAGMALI_3 | 0.0 | 1.0 | 0.0 |
| EBAGMALI_4 | 0.0 | 1.0 | 0.0 |
| EBAGMALI_5 | 0.0 | 1.0 | 0.0 |
| EBAGMALI_6 | 0.0 | 1.0 | 0.0 |
| EBAGMALI_7 | 0.0 | 1.0 | 0.0 |
| EBAGMALI_8 | 0.0 | 1.0 | 0.0 |
| EBAGMALI_9 | 0.0 | 1.0 | 0.0 |
| EBAGMALI_10 | 0.0 | 1.0 | 0.0 |
| EBAGMALI_11 | 0.0 | 1.0 | 0.0 |
| EBAGMALI_12 | 0.0 | 1.0 | 0.0 |
| EBAGMALI_13 | 0.0 | 1.0 | 0.0 |
| EBAGMALI_14 | 0.0 | 1.0 | 0.0 |
| EBAGMALI_15 | 0.0 | 1.0 | 0.0 |
| EBAGMALI_16 | 0.0 | 1.0 | 0.0 |
| EBAGMALI_17 | 0.0 | 1.0 | 0.0 |
| EBAGMALI_18 | 0.0 | 1.0 | 0.0 |
| EBAGMALI_19 | 0.0 | 1.0 | 0.0 |
| EBAGMALI_20 | 0.0 | 1.0 | 0.0 |
| EBAGMALI_21 | 0.0 | 1.0 | 0.0 |
| EBAGMALI_22 | 0.0 | 1.0 | 0.0 |
| EBAGMALI_23 | 0.0 | 1.0 | 0.0 |
| EBAGMALI_24 | 0.0 | 1.0 | 0.0 |
| EBAGMALI_25 | 0.0 | 1.0 | 0.0 |
| EBAGMALI_26 | 0.0 | 1.0 | 0.0 |
| EBAGMALI_27 | 0.0 | 1.0 | 0.0 |
| EBAGMALI_28 | 0.0 | 1.0 | 0.0 |
| EBAGMALI_29 | 0.0 | 1.0 | 0.0 |
| EBAGMALI_30 | 0.0 | 1.0 | 0.0 |
| EBAGMALI_31 | 0.0 | 1.0 | 0.0 |
| EBAGMALI_32 | 0.0 | 1.0 | 0.0 |
| EBAGMALI_33 | 0.0 | 1.0 | 0.0 |
| EBAGMALI_34 | 0.0 | 1.0 | 0.0 |
| EBAGMALI_35 | 0.0 | 1.0 | 0.0 |
| EBAGMALI_36 | 0.0 | 1.0 | 0.0 |
| EBAGMALI_37 | 1.0 | 0.0 | 1.0 |
| EBAGMALI_38 | 0.0 | 1.0 | 0.0 |
| EBAGMALI_39 | 0.0 | 1.0 | 0.0 |
| EBAGMALI_40 | 0.0 | 1.0 | 0.0 |
| EBAGMALI_41 | 0.0 | 1.0 | 0.0 |
| EBAGMALI_42 | 0.0 | 1.0 | 0.0 |
| EBAGMALI_43 | 0.0 | 1.0 | 0.0 |
| EBAGMALI_44 | 0.0 | 1.0 | 0.0 |
| EBAGMALI_45 | 0.0 | 1.0 | 0.0 |
| EBAGMALI_46 | 0.0 | 1.0 | 0.0 |
| EBAGMALI_47 | 1.0 | 0.0 | 1.0 |
| EBAGMALI_48 | 0.0 | 1.0 | 0.0 |
| EBAGMALI_49 | 1.0 | 0.0 | 1.0 |
| EBAGMALI_50 | 0.0 | 1.0 | 0.0 |
| EBAGMALI_51 | 0.0 | 1.0 | 0.0 |
| EBAGMALI_52 | 0.0 | 1.0 | 0.0 |
| EBAGMALI_53 | 1.0 | 0.0 | 1.0 |
| EBAGMALI_54 | 0.0 | 1.0 | 0.0 |
| EBAGMALI_55 | 0.0 | 1.0 | 0.0 |
| EBAGMALI_56 | 0.0 | 1.0 | 0.0 |
| EBAGMALI_57 | 1.0 | 0.0 | 1.0 |
| EBAGMALI_58 | 0.0 | 1.0 | 0.0 |
| EBAGMALI_59 | 1.0 | 0.0 | 1.0 |
| EBAGMALI_60 | 0.0 | 1.0 | 0.0 |
| EBAGMALI_61 | 1.0 | 0.0 | 1.0 |
| EBAGMALI_62 | 1.0 | 0.0 | 1.0 |
| EBAGMALI_63 | 1.0 | 0.0 | 1.0 |
| EBAGMALI_64 | 0.0 | 1.0 | 0.0 |
| EBAGMALI_65 | 0.0 | 1.0 | 0.0 |
| EBAGMALI_66 | 0.0 | 1.0 | 0.0 |
| EBAGMALI_68 | 1.0 | 0.0 | 1.0 |
| EBAGMALI_69 | 0.0 | 1.0 | 0.0 |
| EBAGMALI_71 | 1.0 | 0.0 | 1.0 |
| EBAGMALI_72 | 1.0 | 0.0 | 1.0 |
| EBAGMALI_73 | 1.0 | 0.0 | 1.0 |
| EBAGMALI_74 | 0.0 | 1.0 | 0.0 |
| EBAGMALI_75 | 0.0 | 1.0 | 0.0 |
| EBAGMALI_76 | 0.0 | 1.0 | 0.0 |
| EBAGMALI_77 | 0.0 | 1.0 | 0.0 |
| EBAGMALI_78 | 1.0 | 0.0 | 1.0 |
| EBAGMALI_79 | 1.0 | 0.0 | 1.0 |
| EBAGMALI_80 | 1.0 | 0.0 | 1.0 |
| EBAGMALI_81 | 1.0 | 0.0 | 1.0 |
| EBAGMALI_82 | 1.0 | 0.0 | 1.0 |
| EBAGMALI_83 | 1.0 | 0.0 | 1.0 |
| EBAGMALI_84 | 1.0 | 0.0 | 1.0 |
| EBAGMALI_85 | 1.0 | 0.0 | 1.0 |
| EBAGMALI_86 | 1.0 | 0.0 | 1.0 |
| EBAGMALI_87 | 1.0 | 0.0 | 1.0 |
| EBAGMALI_88 | 0.0 | 1.0 | 0.0 |
| EBAGMALI_89 | 1.0 | 0.0 | 1.0 |
| EBAGMALI_90 | 1.0 | 0.0 | 1.0 |
| EBAGMALI_91 | 0.0 | 1.0 | 0.0 |
| EBAGMALI_92 | 1.0 | 0.0 | 1.0 |
| EBAGMALI_93 | 1.0 | 0.0 | 1.0 |
| EBAGMALI_94 | 1.0 | 0.0 | 1.0 |
| EBAGMALI_95 | 0.0 | 1.0 | 0.0 |
| EBAGMALI_96 | 1.0 | 0.0 | 1.0 |
| EBAGMALI_97 | 0.0 | 1.0 | 0.0 |
| EBAGMALI_98 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| EBAGMALI_14 | 4714 | 18528 | True | Myoviridae | VOG6282, |
| EBAGMALI_36 | 6982 | 17143 | False | Siphoviridae | VOG0749, |
| EBAGMALI_66 | 152753 | 166996 | False | Unknown | VOG3992, |
Phigaro v2.4.0 (Database: Jan. 2024 release)