Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 7 | 0 | 0 | 7.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PAPBBLMM_21 | 20055 | 21980 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| PAPBBLMM_38 | 10334 | 11242 | aad(6) | ARO:3002628 | aad(6) | 100.00 | 109.42 | AY712687.1 |
| PAPBBLMM_38 | 9795 | 10337 | SAT-4 | ARO:3002897 | SAT-4 | 99.44 | 100.00 | U01945.1 |
| PAPBBLMM_38 | 8908 | 9702 | APH(3')-IIIa | ARO:3002647 | APH(3')-IIIa | 100.00 | 100.00 | CP004067.1 |
| PAPBBLMM_29 | 357 | 1094 | ErmB | ARO:3000375 | ErmB | 98.78 | 98.79 | AF242872.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PAPBBLMM_38 | 10334 | 11242 | ant(6)-Ia | Streptomycin | 100.00 | 100.00 | AF330699 |
| PAPBBLMM_38 | 8908 | 9702 | aph(3')-III | Kanamycin, Amikacin, Neomycin, Butirosin, Isepamicin, Lividomycin, Paromomycin, Ribostamycin | 100.00 | 100.00 | M26832 |
| PAPBBLMM_29 | 357 | 1094 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | U18931 |
| PAPBBLMM_21 | 20055 | 21980 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PAPBBLMM_29 | 33576 | 34349 | aad9 | ANT(9) family aminoglycoside nucleotidyltransferase | EXACTX | 100.00 | 100.00 | WP_002578722.1 |
| PAPBBLMM_38 | 736 | 1599 | aadE | aminoglycoside 6-adenylyltransferase AadE | EXACTX | 100.00 | 100.00 | WP_001255868.1 |
| PAPBBLMM_38 | 10337 | 11242 | ant(6)-Ia | aminoglycoside nucleotidyltransferase ANT(6)-Ia | EXACTX | 100.00 | 100.00 | WP_001255866.1 |
| PAPBBLMM_38 | 8911 | 9702 | aph(3')-IIIa | aminoglycoside O-phosphotransferase APH(3')-IIIa | EXACTX | 100.00 | 100.00 | WP_001096887.1 |
| PAPBBLMM_29 | 360 | 1094 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | EXACTX | 100.00 | 100.00 | WP_002292226.1 |
| PAPBBLMM_38 | 9798 | 10337 | sat4 | streptothricin N-acetyltransferase Sat4 | EXACTX | 100.00 | 100.00 | WP_000627290.1 |
| PAPBBLMM_21 | 20058 | 21980 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PAPBBLMM_1 | 0.0 | 1.0 | 0.0 |
| PAPBBLMM_2 | 0.0 | 1.0 | 0.0 |
| PAPBBLMM_3 | 0.0 | 1.0 | 0.0 |
| PAPBBLMM_4 | 0.0 | 1.0 | 0.0 |
| PAPBBLMM_5 | 0.0 | 1.0 | 0.0 |
| PAPBBLMM_6 | 0.0 | 1.0 | 0.0 |
| PAPBBLMM_7 | 0.0 | 1.0 | 0.0 |
| PAPBBLMM_8 | 0.0 | 1.0 | 0.0 |
| PAPBBLMM_9 | 0.0 | 1.0 | 0.0 |
| PAPBBLMM_10 | 0.0 | 1.0 | 0.0 |
| PAPBBLMM_11 | 0.0 | 1.0 | 0.0 |
| PAPBBLMM_12 | 0.0 | 1.0 | 0.0 |
| PAPBBLMM_13 | 0.0 | 1.0 | 0.0 |
| PAPBBLMM_14 | 0.0 | 1.0 | 0.0 |
| PAPBBLMM_15 | 0.0 | 1.0 | 0.0 |
| PAPBBLMM_16 | 0.0 | 1.0 | 0.0 |
| PAPBBLMM_17 | 0.0 | 1.0 | 0.0 |
| PAPBBLMM_18 | 0.0 | 1.0 | 0.0 |
| PAPBBLMM_19 | 0.0 | 1.0 | 0.0 |
| PAPBBLMM_20 | 0.0 | 1.0 | 0.0 |
| PAPBBLMM_21 | 0.0 | 1.0 | 0.0 |
| PAPBBLMM_22 | 0.0 | 1.0 | 0.0 |
| PAPBBLMM_23 | 0.0 | 1.0 | 0.0 |
| PAPBBLMM_24 | 0.0 | 1.0 | 0.0 |
| PAPBBLMM_25 | 0.0 | 1.0 | 0.0 |
| PAPBBLMM_26 | 0.0 | 1.0 | 0.0 |
| PAPBBLMM_27 | 0.0 | 1.0 | 0.0 |
| PAPBBLMM_28 | 0.0 | 1.0 | 0.0 |
| PAPBBLMM_29 | 1.0 | 0.0 | 1.0 |
| PAPBBLMM_30 | 0.0 | 1.0 | 0.0 |
| PAPBBLMM_31 | 0.0 | 1.0 | 0.0 |
| PAPBBLMM_32 | 0.0 | 1.0 | 0.0 |
| PAPBBLMM_33 | 0.0 | 1.0 | 0.0 |
| PAPBBLMM_34 | 0.0 | 1.0 | 0.0 |
| PAPBBLMM_35 | 1.0 | 0.0 | 1.0 |
| PAPBBLMM_36 | 0.0 | 1.0 | 0.0 |
| PAPBBLMM_37 | 1.0 | 0.0 | 1.0 |
| PAPBBLMM_38 | 1.0 | 0.0 | 1.0 |
| PAPBBLMM_39 | 0.0 | 1.0 | 0.0 |
| PAPBBLMM_40 | 1.0 | 0.0 | 1.0 |
| PAPBBLMM_41 | 1.0 | 0.0 | 1.0 |
| PAPBBLMM_42 | 0.0 | 1.0 | 0.0 |
| PAPBBLMM_44 | 0.0 | 1.0 | 0.0 |
| PAPBBLMM_45 | 0.0 | 1.0 | 0.0 |
| PAPBBLMM_46 | 0.0 | 1.0 | 0.0 |
| PAPBBLMM_47 | 1.0 | 0.0 | 1.0 |
| PAPBBLMM_48 | 1.0 | 0.0 | 1.0 |
| PAPBBLMM_49 | 0.0 | 1.0 | 0.0 |
| PAPBBLMM_50 | 0.0 | 1.0 | 0.0 |
| PAPBBLMM_51 | 0.0 | 1.0 | 0.0 |
| PAPBBLMM_52 | 0.0 | 1.0 | 0.0 |
| PAPBBLMM_53 | 1.0 | 0.0 | 1.0 |
| PAPBBLMM_54 | 0.0 | 1.0 | 0.0 |
| PAPBBLMM_55 | 1.0 | 0.0 | 1.0 |
| PAPBBLMM_56 | 1.0 | 0.0 | 1.0 |
| PAPBBLMM_57 | 0.0 | 1.0 | 0.0 |
| PAPBBLMM_58 | 0.0 | 1.0 | 0.0 |
| PAPBBLMM_59 | 1.0 | 0.0 | 1.0 |
| PAPBBLMM_60 | 1.0 | 0.0 | 1.0 |
| PAPBBLMM_61 | 0.0 | 1.0 | 0.0 |
| PAPBBLMM_62 | 1.0 | 0.0 | 1.0 |
| PAPBBLMM_63 | 0.0 | 1.0 | 0.0 |
| PAPBBLMM_64 | 0.0 | 1.0 | 0.0 |
| PAPBBLMM_65 | 0.0 | 1.0 | 0.0 |
| PAPBBLMM_66 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PAPBBLMM_16 | 52983 | 65488 | False | Siphoviridae | VOG3691, |
Phigaro v2.4.0 (Database: Jan. 2024 release)