Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 1 | 3.16 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EHDHHKFJ_8 | 115308 | 117233 | tet(Q) | ARO:3000191 | tet(Q) | 89.39 | 97.56 | Z21523.1 |
| EHDHHKFJ_33 | 17159 | 19084 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| EHDHHKFJ_56 | 589 | 1755 | tet(X) | ARO:3000205 | tet(X) | 99.74 | 100.00 | M37699.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| EHDHHKFJ_56 | 589 | 1755 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.91 | 100.00 | M37699 |
| EHDHHKFJ_33 | 17159 | 19084 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EHDHHKFJ_56 | 589 | 1752 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | BLASTX | 99.74 | 100.00 | WP_008651082.1 |
| EHDHHKFJ_33 | 17162 | 19084 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| EHDHHKFJ_8 | 115308 | 117230 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.86 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| EHDHHKFJ_3 | 60079 | 58499 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| EHDHHKFJ_1 | 0.0 | 1.0 | 0.0 |
| EHDHHKFJ_2 | 0.0 | 1.0 | 0.0 |
| EHDHHKFJ_3 | 0.0 | 1.0 | 0.0 |
| EHDHHKFJ_4 | 0.0 | 1.0 | 0.0 |
| EHDHHKFJ_5 | 0.0 | 1.0 | 0.0 |
| EHDHHKFJ_6 | 0.0 | 1.0 | 0.0 |
| EHDHHKFJ_7 | 0.0 | 1.0 | 0.0 |
| EHDHHKFJ_8 | 0.0 | 1.0 | 0.0 |
| EHDHHKFJ_9 | 0.0 | 1.0 | 0.0 |
| EHDHHKFJ_10 | 0.0 | 1.0 | 0.0 |
| EHDHHKFJ_11 | 0.0 | 1.0 | 0.0 |
| EHDHHKFJ_12 | 1.0 | 0.0 | 1.0 |
| EHDHHKFJ_13 | 0.0 | 1.0 | 0.0 |
| EHDHHKFJ_14 | 0.0 | 1.0 | 0.0 |
| EHDHHKFJ_15 | 0.0 | 1.0 | 0.0 |
| EHDHHKFJ_16 | 0.0 | 1.0 | 0.0 |
| EHDHHKFJ_17 | 0.0 | 1.0 | 0.0 |
| EHDHHKFJ_18 | 0.0 | 1.0 | 0.0 |
| EHDHHKFJ_19 | 0.0 | 1.0 | 0.0 |
| EHDHHKFJ_20 | 0.0 | 1.0 | 0.0 |
| EHDHHKFJ_21 | 1.0 | 0.0 | 1.0 |
| EHDHHKFJ_22 | 0.0 | 1.0 | 0.0 |
| EHDHHKFJ_23 | 1.0 | 0.0 | 1.0 |
| EHDHHKFJ_24 | 0.0 | 1.0 | 0.0 |
| EHDHHKFJ_25 | 0.0 | 1.0 | 0.0 |
| EHDHHKFJ_26 | 0.0 | 1.0 | 0.0 |
| EHDHHKFJ_27 | 0.0 | 1.0 | 0.0 |
| EHDHHKFJ_28 | 0.0 | 1.0 | 0.0 |
| EHDHHKFJ_29 | 0.0 | 1.0 | 0.0 |
| EHDHHKFJ_30 | 0.0 | 1.0 | 0.0 |
| EHDHHKFJ_31 | 0.0 | 1.0 | 0.0 |
| EHDHHKFJ_32 | 0.0 | 1.0 | 0.0 |
| EHDHHKFJ_33 | 0.0 | 1.0 | 0.0 |
| EHDHHKFJ_34 | 0.0 | 1.0 | 0.0 |
| EHDHHKFJ_35 | 0.0 | 1.0 | 0.0 |
| EHDHHKFJ_36 | 0.0 | 1.0 | 0.0 |
| EHDHHKFJ_37 | 0.0 | 1.0 | 0.0 |
| EHDHHKFJ_38 | 1.0 | 0.0 | 1.0 |
| EHDHHKFJ_39 | 0.0 | 1.0 | 0.0 |
| EHDHHKFJ_40 | 0.0 | 1.0 | 0.0 |
| EHDHHKFJ_41 | 0.0 | 1.0 | 0.0 |
| EHDHHKFJ_42 | 1.0 | 0.0 | 1.0 |
| EHDHHKFJ_43 | 0.0 | 1.0 | 0.0 |
| EHDHHKFJ_44 | 0.0 | 1.0 | 0.0 |
| EHDHHKFJ_45 | 0.0 | 1.0 | 0.0 |
| EHDHHKFJ_47 | 0.0 | 1.0 | 0.0 |
| EHDHHKFJ_48 | 1.0 | 0.0 | 1.0 |
| EHDHHKFJ_49 | 1.0 | 0.0 | 1.0 |
| EHDHHKFJ_50 | 0.0 | 1.0 | 0.0 |
| EHDHHKFJ_51 | 1.0 | 0.0 | 1.0 |
| EHDHHKFJ_52 | 1.0 | 0.0 | 1.0 |
| EHDHHKFJ_53 | 0.0 | 1.0 | 0.0 |
| EHDHHKFJ_54 | 0.0 | 1.0 | 0.0 |
| EHDHHKFJ_55 | 0.0 | 1.0 | 0.0 |
| EHDHHKFJ_56 | 1.0 | 0.0 | 1.0 |
| EHDHHKFJ_57 | 1.0 | 0.0 | 1.0 |
| EHDHHKFJ_58 | 0.0 | 1.0 | 0.0 |
| EHDHHKFJ_59 | 0.0 | 1.0 | 0.0 |
| EHDHHKFJ_60 | 1.0 | 0.0 | 1.0 |
| EHDHHKFJ_61 | 1.0 | 0.0 | 1.0 |
| EHDHHKFJ_62 | 0.0 | 1.0 | 0.0 |
| EHDHHKFJ_63 | 0.0 | 1.0 | 0.0 |
| EHDHHKFJ_64 | 0.0 | 1.0 | 0.0 |
| EHDHHKFJ_65 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| EHDHHKFJ_22 | 212890 | 222214 | False | Myoviridae | VOG4568, |
| EHDHHKFJ_55 | 121714 | 134646 | False | Siphoviridae | VOG7238, |
Phigaro v2.4.0 (Database: Jan. 2024 release)