Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GCHHHCKP_65 | 8360 | 10279 | tet(O) | ARO:3000190 | tet(O) | 97.50 | 100.00 | M18896.2 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GCHHHCKP_65 | 8360 | 10279 | tet(O) | Doxycycline, Tetracycline, Minocycline | 99.32 | 100.00 | Y07780 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GCHHHCKP_65 | 8363 | 10279 | tet(O) | tetracycline resistance ribosomal protection protein Tet(O) | BLASTX | 99.06 | 100.00 | WP_014636291.1 |
| GCHHHCKP_56 | 7568 | 7768 | vanU-G | glycopeptide resistance transcriptional regulator VanU-G | PARTIALX | 80.60 | 89.33 | WP_021418929.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GCHHHCKP_1 | 1.0 | 0.0 | 1.0 |
| GCHHHCKP_3 | 1.0 | 0.0 | 1.0 |
| GCHHHCKP_4 | 0.0 | 1.0 | 0.0 |
| GCHHHCKP_5 | 0.0 | 1.0 | 0.0 |
| GCHHHCKP_6 | 0.0 | 1.0 | 0.0 |
| GCHHHCKP_7 | 0.0 | 1.0 | 0.0 |
| GCHHHCKP_8 | 0.0 | 1.0 | 0.0 |
| GCHHHCKP_9 | 0.0 | 1.0 | 0.0 |
| GCHHHCKP_10 | 0.0 | 1.0 | 0.0 |
| GCHHHCKP_11 | 0.0 | 1.0 | 0.0 |
| GCHHHCKP_12 | 0.0 | 1.0 | 0.0 |
| GCHHHCKP_13 | 0.0 | 1.0 | 0.0 |
| GCHHHCKP_14 | 0.0 | 1.0 | 0.0 |
| GCHHHCKP_15 | 0.0 | 1.0 | 0.0 |
| GCHHHCKP_16 | 0.0 | 1.0 | 0.0 |
| GCHHHCKP_17 | 0.0 | 1.0 | 0.0 |
| GCHHHCKP_18 | 0.0 | 1.0 | 0.0 |
| GCHHHCKP_19 | 0.0 | 1.0 | 0.0 |
| GCHHHCKP_20 | 0.0 | 1.0 | 0.0 |
| GCHHHCKP_21 | 0.0 | 1.0 | 0.0 |
| GCHHHCKP_22 | 0.0 | 1.0 | 0.0 |
| GCHHHCKP_23 | 0.0 | 1.0 | 0.0 |
| GCHHHCKP_24 | 0.0 | 1.0 | 0.0 |
| GCHHHCKP_25 | 0.0 | 1.0 | 0.0 |
| GCHHHCKP_26 | 0.0 | 1.0 | 0.0 |
| GCHHHCKP_27 | 0.0 | 1.0 | 0.0 |
| GCHHHCKP_28 | 0.0 | 1.0 | 0.0 |
| GCHHHCKP_29 | 0.0 | 1.0 | 0.0 |
| GCHHHCKP_30 | 0.0 | 1.0 | 0.0 |
| GCHHHCKP_31 | 0.0 | 1.0 | 0.0 |
| GCHHHCKP_32 | 0.0 | 1.0 | 0.0 |
| GCHHHCKP_33 | 0.0 | 1.0 | 0.0 |
| GCHHHCKP_34 | 0.0 | 1.0 | 0.0 |
| GCHHHCKP_35 | 0.0 | 1.0 | 0.0 |
| GCHHHCKP_36 | 0.0 | 1.0 | 0.0 |
| GCHHHCKP_37 | 0.0 | 1.0 | 0.0 |
| GCHHHCKP_38 | 0.0 | 1.0 | 0.0 |
| GCHHHCKP_39 | 0.0 | 1.0 | 0.0 |
| GCHHHCKP_40 | 0.0 | 1.0 | 0.0 |
| GCHHHCKP_41 | 0.0 | 1.0 | 0.0 |
| GCHHHCKP_42 | 0.0 | 1.0 | 0.0 |
| GCHHHCKP_43 | 0.0 | 1.0 | 0.0 |
| GCHHHCKP_44 | 0.0 | 1.0 | 0.0 |
| GCHHHCKP_45 | 0.0 | 1.0 | 0.0 |
| GCHHHCKP_46 | 0.0 | 1.0 | 0.0 |
| GCHHHCKP_47 | 0.0 | 1.0 | 0.0 |
| GCHHHCKP_48 | 0.0 | 1.0 | 0.0 |
| GCHHHCKP_49 | 0.0 | 1.0 | 0.0 |
| GCHHHCKP_50 | 1.0 | 0.0 | 1.0 |
| GCHHHCKP_51 | 0.0 | 1.0 | 0.0 |
| GCHHHCKP_52 | 0.0 | 1.0 | 0.0 |
| GCHHHCKP_53 | 1.0 | 0.0 | 1.0 |
| GCHHHCKP_54 | 1.0 | 0.0 | 1.0 |
| GCHHHCKP_55 | 0.0 | 1.0 | 0.0 |
| GCHHHCKP_56 | 0.0 | 1.0 | 0.0 |
| GCHHHCKP_57 | 0.0 | 1.0 | 0.0 |
| GCHHHCKP_58 | 0.0 | 1.0 | 0.0 |
| GCHHHCKP_59 | 0.0 | 1.0 | 0.0 |
| GCHHHCKP_60 | 0.0 | 1.0 | 0.0 |
| GCHHHCKP_61 | 0.0 | 1.0 | 0.0 |
| GCHHHCKP_62 | 1.0 | 0.0 | 1.0 |
| GCHHHCKP_63 | 0.0 | 1.0 | 0.0 |
| GCHHHCKP_64 | 1.0 | 0.0 | 1.0 |
| GCHHHCKP_65 | 0.0 | 1.0 | 0.0 |
| GCHHHCKP_66 | 0.0 | 1.0 | 0.0 |
| GCHHHCKP_67 | 1.0 | 0.0 | 1.0 |
| GCHHHCKP_68 | 0.0 | 1.0 | 0.0 |
| GCHHHCKP_69 | 1.0 | 0.0 | 1.0 |
| GCHHHCKP_70 | 0.0 | 1.0 | 0.0 |
| GCHHHCKP_71 | 1.0 | 0.0 | 1.0 |
| GCHHHCKP_72 | 0.0 | 1.0 | 0.0 |
| GCHHHCKP_73 | 0.0 | 1.0 | 0.0 |
| GCHHHCKP_74 | 0.0 | 1.0 | 0.0 |
| GCHHHCKP_75 | 1.0 | 0.0 | 1.0 |
| GCHHHCKP_76 | 1.0 | 0.0 | 1.0 |
| GCHHHCKP_77 | 1.0 | 0.0 | 1.0 |
| GCHHHCKP_78 | 1.0 | 0.0 | 1.0 |
| GCHHHCKP_79 | 0.0 | 1.0 | 0.0 |
| GCHHHCKP_80 | 1.0 | 0.0 | 1.0 |
| GCHHHCKP_81 | 0.0 | 1.0 | 0.0 |
| GCHHHCKP_82 | 1.0 | 0.0 | 1.0 |
| GCHHHCKP_83 | 0.0 | 1.0 | 0.0 |
| GCHHHCKP_85 | 1.0 | 0.0 | 1.0 |
| GCHHHCKP_86 | 1.0 | 0.0 | 1.0 |
| GCHHHCKP_87 | 0.0 | 1.0 | 0.0 |
| GCHHHCKP_88 | 1.0 | 0.0 | 1.0 |
| GCHHHCKP_89 | 1.0 | 0.0 | 1.0 |
| GCHHHCKP_90 | 1.0 | 0.0 | 1.0 |
| GCHHHCKP_91 | 1.0 | 0.0 | 1.0 |
| GCHHHCKP_92 | 0.0 | 1.0 | 0.0 |
| GCHHHCKP_93 | 1.0 | 0.0 | 1.0 |
| GCHHHCKP_94 | 0.0 | 1.0 | 0.0 |
| GCHHHCKP_95 | 1.0 | 0.0 | 1.0 |
| GCHHHCKP_96 | 0.0 | 1.0 | 0.0 |
| GCHHHCKP_97 | 1.0 | 0.0 | 1.0 |
| GCHHHCKP_98 | 0.0 | 1.0 | 0.0 |
| GCHHHCKP_100 | 1.0 | 0.0 | 1.0 |
| GCHHHCKP_101 | 0.0 | 1.0 | 0.0 |
| GCHHHCKP_102 | 0.0 | 1.0 | 0.0 |
| GCHHHCKP_103 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GCHHHCKP_37 | 98070 | 123973 | False | Myoviridae | VOG10056, |
Phigaro v2.4.0 (Database: Jan. 2024 release)