Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| BFMHJCMO_22 | 159985 | 161190 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.25 | 100.00 | AF251288.1 |
| BFMHJCMO_23 | 3558 | 5483 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| BFMHJCMO_54 | 869 | 1834 | CfxA2 | ARO:3003002 | CfxA2 | 100.00 | 100.00 | AF118110.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| BFMHJCMO_54 | 869 | 1834 | cfxA3 | Ampicillin | 99.90 | 100.00 | AF472622 |
| BFMHJCMO_54 | 869 | 1834 | cfxA4 | Unknown Beta-lactam | 99.90 | 100.00 | AY769933 |
| BFMHJCMO_54 | 869 | 1834 | cfxA5 | Unknown Beta-lactam | 99.90 | 100.00 | AY769934 |
| BFMHJCMO_54 | 869 | 1834 | cfxA | Cefoxitin, Ampicillin | 99.90 | 100.00 | U38243 |
| BFMHJCMO_23 | 3558 | 5483 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| BFMHJCMO_54 | 869 | 1831 | cfxA | CfxA family broad-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_004339683.1 |
| BFMHJCMO_22 | 159451 | 159960 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| BFMHJCMO_23 | 3561 | 5483 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| BFMHJCMO_22 | 159988 | 161190 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.25 | 100.00 | WP_063853729.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| BFMHJCMO_1 | 0.0 | 1.0 | 0.0 |
| BFMHJCMO_2 | 0.0 | 1.0 | 0.0 |
| BFMHJCMO_3 | 0.0 | 1.0 | 0.0 |
| BFMHJCMO_4 | 0.0 | 1.0 | 0.0 |
| BFMHJCMO_5 | 0.0 | 1.0 | 0.0 |
| BFMHJCMO_6 | 0.0 | 1.0 | 0.0 |
| BFMHJCMO_7 | 0.0 | 1.0 | 0.0 |
| BFMHJCMO_8 | 0.0 | 1.0 | 0.0 |
| BFMHJCMO_9 | 0.0 | 1.0 | 0.0 |
| BFMHJCMO_10 | 0.0 | 1.0 | 0.0 |
| BFMHJCMO_11 | 0.0 | 1.0 | 0.0 |
| BFMHJCMO_12 | 0.0 | 1.0 | 0.0 |
| BFMHJCMO_13 | 0.0 | 1.0 | 0.0 |
| BFMHJCMO_14 | 0.0 | 1.0 | 0.0 |
| BFMHJCMO_15 | 0.0 | 1.0 | 0.0 |
| BFMHJCMO_16 | 0.0 | 1.0 | 0.0 |
| BFMHJCMO_17 | 0.0 | 1.0 | 0.0 |
| BFMHJCMO_18 | 0.0 | 1.0 | 0.0 |
| BFMHJCMO_19 | 0.0 | 1.0 | 0.0 |
| BFMHJCMO_20 | 0.0 | 1.0 | 0.0 |
| BFMHJCMO_21 | 0.0 | 1.0 | 0.0 |
| BFMHJCMO_22 | 0.0 | 1.0 | 0.0 |
| BFMHJCMO_23 | 0.0 | 1.0 | 0.0 |
| BFMHJCMO_24 | 0.0 | 1.0 | 0.0 |
| BFMHJCMO_25 | 0.0 | 1.0 | 0.0 |
| BFMHJCMO_26 | 0.0 | 1.0 | 0.0 |
| BFMHJCMO_27 | 0.0 | 1.0 | 0.0 |
| BFMHJCMO_28 | 0.0 | 1.0 | 0.0 |
| BFMHJCMO_29 | 0.0 | 1.0 | 0.0 |
| BFMHJCMO_30 | 0.0 | 1.0 | 0.0 |
| BFMHJCMO_31 | 0.0 | 1.0 | 0.0 |
| BFMHJCMO_32 | 0.0 | 1.0 | 0.0 |
| BFMHJCMO_33 | 0.0 | 1.0 | 0.0 |
| BFMHJCMO_34 | 0.0 | 1.0 | 0.0 |
| BFMHJCMO_35 | 1.0 | 0.0 | 1.0 |
| BFMHJCMO_36 | 0.0 | 1.0 | 0.0 |
| BFMHJCMO_37 | 0.0 | 1.0 | 0.0 |
| BFMHJCMO_38 | 0.0 | 1.0 | 0.0 |
| BFMHJCMO_39 | 1.0 | 0.0 | 1.0 |
| BFMHJCMO_40 | 0.0 | 1.0 | 0.0 |
| BFMHJCMO_41 | 0.0 | 1.0 | 0.0 |
| BFMHJCMO_42 | 0.0 | 1.0 | 0.0 |
| BFMHJCMO_43 | 0.0 | 1.0 | 0.0 |
| BFMHJCMO_44 | 0.0 | 1.0 | 0.0 |
| BFMHJCMO_45 | 0.0 | 1.0 | 0.0 |
| BFMHJCMO_46 | 1.0 | 0.0 | 1.0 |
| BFMHJCMO_47 | 0.0 | 1.0 | 0.0 |
| BFMHJCMO_48 | 0.0 | 1.0 | 0.0 |
| BFMHJCMO_49 | 0.0 | 1.0 | 0.0 |
| BFMHJCMO_50 | 1.0 | 0.0 | 1.0 |
| BFMHJCMO_51 | 0.0 | 1.0 | 0.0 |
| BFMHJCMO_52 | 0.0 | 1.0 | 0.0 |
| BFMHJCMO_53 | 1.0 | 0.0 | 1.0 |
| BFMHJCMO_54 | 0.0 | 1.0 | 0.0 |
| BFMHJCMO_55 | 0.0 | 1.0 | 0.0 |
| BFMHJCMO_56 | 1.0 | 0.0 | 1.0 |
| BFMHJCMO_57 | 1.0 | 0.0 | 1.0 |
| BFMHJCMO_58 | 0.0 | 1.0 | 0.0 |
| BFMHJCMO_59 | 1.0 | 0.0 | 1.0 |
| BFMHJCMO_61 | 1.0 | 0.0 | 1.0 |
| BFMHJCMO_62 | 0.0 | 1.0 | 0.0 |
| BFMHJCMO_63 | 1.0 | 0.0 | 1.0 |
| BFMHJCMO_64 | 1.0 | 0.0 | 1.0 |
| BFMHJCMO_65 | 1.0 | 0.0 | 1.0 |
| BFMHJCMO_66 | 0.0 | 1.0 | 0.0 |
| BFMHJCMO_67 | 1.0 | 0.0 | 1.0 |
| BFMHJCMO_68 | 1.0 | 0.0 | 1.0 |
| BFMHJCMO_69 | 1.0 | 0.0 | 1.0 |
| BFMHJCMO_70 | 1.0 | 0.0 | 1.0 |
| BFMHJCMO_71 | 1.0 | 0.0 | 1.0 |
| BFMHJCMO_72 | 1.0 | 0.0 | 1.0 |
| BFMHJCMO_73 | 1.0 | 0.0 | 1.0 |
| BFMHJCMO_74 | 1.0 | 0.0 | 1.0 |
| BFMHJCMO_75 | 0.0 | 1.0 | 0.0 |
| BFMHJCMO_76 | 0.0 | 1.0 | 0.0 |
| BFMHJCMO_77 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| BFMHJCMO_4 | 68913 | 84433 | False | Myoviridae | VOG5840, |
Phigaro v2.4.0 (Database: Jan. 2024 release)