Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 1 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GFHLHJHJ_21 | 33930 | 35903 | tet(Q) | ARO:3000191 | tet(Q) | 96.35 | 100.00 | Z21523.1 |
| GFHLHJHJ_25 | 136 | 1104 | CfxA2 | ARO:3003002 | CfxA2 | 99.69 | 100.31 | AF118110.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GFHLHJHJ_21 | 33930 | 35855 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| GFHLHJHJ_25 | 136 | 1104 | cfxA3 | Ampicillin | 99.59 | 100.00 | AF472622 |
| GFHLHJHJ_25 | 136 | 1104 | cfxA4 | Unknown Beta-lactam | 99.59 | 100.00 | AY769933 |
| GFHLHJHJ_25 | 136 | 1104 | cfxA5 | Unknown Beta-lactam | 99.59 | 100.00 | AY769934 |
| GFHLHJHJ_25 | 136 | 1104 | cfxA | Cefoxitin, Ampicillin | 99.59 | 100.00 | U38243 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GFHLHJHJ_25 | 136 | 1101 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 99.69 | 100.00 | WP_004339683.1 |
| GFHLHJHJ_21 | 33933 | 35855 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GFHLHJHJ_55 | 107554 | 105974 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| GFHLHJHJ_72 | 1064 | 1644 | repUS2 | 584 / 681 | 80.48 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GFHLHJHJ_1 | 0.0 | 1.0 | 0.0 |
| GFHLHJHJ_2 | 0.0 | 1.0 | 0.0 |
| GFHLHJHJ_3 | 0.0 | 1.0 | 0.0 |
| GFHLHJHJ_4 | 0.0 | 1.0 | 0.0 |
| GFHLHJHJ_5 | 0.0 | 1.0 | 0.0 |
| GFHLHJHJ_6 | 0.0 | 1.0 | 0.0 |
| GFHLHJHJ_7 | 0.0 | 1.0 | 0.0 |
| GFHLHJHJ_8 | 0.0 | 1.0 | 0.0 |
| GFHLHJHJ_9 | 0.0 | 1.0 | 0.0 |
| GFHLHJHJ_10 | 0.0 | 1.0 | 0.0 |
| GFHLHJHJ_11 | 0.0 | 1.0 | 0.0 |
| GFHLHJHJ_12 | 0.0 | 1.0 | 0.0 |
| GFHLHJHJ_13 | 0.0 | 1.0 | 0.0 |
| GFHLHJHJ_14 | 0.0 | 1.0 | 0.0 |
| GFHLHJHJ_15 | 0.0 | 1.0 | 0.0 |
| GFHLHJHJ_16 | 0.0 | 1.0 | 0.0 |
| GFHLHJHJ_17 | 0.0 | 1.0 | 0.0 |
| GFHLHJHJ_18 | 0.0 | 1.0 | 0.0 |
| GFHLHJHJ_19 | 0.0 | 1.0 | 0.0 |
| GFHLHJHJ_20 | 0.0 | 1.0 | 0.0 |
| GFHLHJHJ_21 | 0.0 | 1.0 | 0.0 |
| GFHLHJHJ_22 | 0.0 | 1.0 | 0.0 |
| GFHLHJHJ_23 | 0.0 | 1.0 | 0.0 |
| GFHLHJHJ_24 | 0.0 | 1.0 | 0.0 |
| GFHLHJHJ_25 | 0.0 | 1.0 | 0.0 |
| GFHLHJHJ_26 | 0.0 | 1.0 | 0.0 |
| GFHLHJHJ_27 | 1.0 | 0.0 | 1.0 |
| GFHLHJHJ_28 | 0.0 | 1.0 | 0.0 |
| GFHLHJHJ_29 | 0.0 | 1.0 | 0.0 |
| GFHLHJHJ_30 | 0.0 | 1.0 | 0.0 |
| GFHLHJHJ_31 | 1.0 | 0.0 | 1.0 |
| GFHLHJHJ_32 | 0.0 | 1.0 | 0.0 |
| GFHLHJHJ_33 | 0.0 | 1.0 | 0.0 |
| GFHLHJHJ_34 | 0.0 | 1.0 | 0.0 |
| GFHLHJHJ_35 | 0.0 | 1.0 | 0.0 |
| GFHLHJHJ_36 | 0.0 | 1.0 | 0.0 |
| GFHLHJHJ_37 | 0.0 | 1.0 | 0.0 |
| GFHLHJHJ_38 | 1.0 | 0.0 | 1.0 |
| GFHLHJHJ_39 | 0.0 | 1.0 | 0.0 |
| GFHLHJHJ_40 | 0.0 | 1.0 | 0.0 |
| GFHLHJHJ_41 | 0.0 | 1.0 | 0.0 |
| GFHLHJHJ_42 | 1.0 | 0.0 | 1.0 |
| GFHLHJHJ_43 | 1.0 | 0.0 | 1.0 |
| GFHLHJHJ_44 | 0.0 | 1.0 | 0.0 |
| GFHLHJHJ_45 | 1.0 | 0.0 | 1.0 |
| GFHLHJHJ_46 | 0.0 | 1.0 | 0.0 |
| GFHLHJHJ_47 | 0.0 | 1.0 | 0.0 |
| GFHLHJHJ_48 | 0.0 | 1.0 | 0.0 |
| GFHLHJHJ_49 | 0.0 | 1.0 | 0.0 |
| GFHLHJHJ_50 | 1.0 | 0.0 | 1.0 |
| GFHLHJHJ_51 | 0.0 | 1.0 | 0.0 |
| GFHLHJHJ_52 | 1.0 | 0.0 | 1.0 |
| GFHLHJHJ_53 | 0.0 | 1.0 | 0.0 |
| GFHLHJHJ_54 | 1.0 | 0.0 | 1.0 |
| GFHLHJHJ_55 | 0.0 | 1.0 | 0.0 |
| GFHLHJHJ_56 | 0.0 | 1.0 | 0.0 |
| GFHLHJHJ_57 | 1.0 | 0.0 | 1.0 |
| GFHLHJHJ_58 | 0.0 | 1.0 | 0.0 |
| GFHLHJHJ_60 | 1.0 | 0.0 | 1.0 |
| GFHLHJHJ_61 | 1.0 | 0.0 | 1.0 |
| GFHLHJHJ_62 | 1.0 | 0.0 | 1.0 |
| GFHLHJHJ_63 | 1.0 | 0.0 | 1.0 |
| GFHLHJHJ_64 | 1.0 | 0.0 | 1.0 |
| GFHLHJHJ_65 | 1.0 | 0.0 | 1.0 |
| GFHLHJHJ_66 | 0.0 | 1.0 | 0.0 |
| GFHLHJHJ_67 | 0.0 | 1.0 | 0.0 |
| GFHLHJHJ_68 | 0.0 | 1.0 | 0.0 |
| GFHLHJHJ_69 | 0.0 | 1.0 | 0.0 |
| GFHLHJHJ_70 | 1.0 | 0.0 | 1.0 |
| GFHLHJHJ_71 | 0.0 | 1.0 | 0.0 |
| GFHLHJHJ_72 | 1.0 | 0.0 | 1.0 |
| GFHLHJHJ_73 | 1.0 | 0.0 | 1.0 |
| GFHLHJHJ_74 | 1.0 | 0.0 | 1.0 |
| GFHLHJHJ_75 | 1.0 | 0.0 | 1.0 |
| GFHLHJHJ_76 | 1.0 | 0.0 | 1.0 |
| GFHLHJHJ_77 | 0.0 | 1.0 | 0.0 |
| GFHLHJHJ_78 | 0.0 | 1.0 | 0.0 |
| GFHLHJHJ_79 | 0.0 | 1.0 | 0.0 |
| GFHLHJHJ_81 | 0.0 | 1.0 | 0.0 |
| GFHLHJHJ_82 | 1.0 | 0.0 | 1.0 |
| GFHLHJHJ_83 | 0.0 | 1.0 | 0.0 |
| GFHLHJHJ_84 | 1.0 | 0.0 | 1.0 |
| GFHLHJHJ_85 | 0.0 | 1.0 | 0.0 |
| GFHLHJHJ_86 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)