Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PJCFHMFC_11 | 292454 | 294428 | tet(Q) | ARO:3000191 | tet(Q) | 100.00 | 97.56 | Z21523.1 |
| PJCFHMFC_33 | 1171 | 3096 | tet(Q) | ARO:3000191 | tet(Q) | 89.08 | 97.56 | Z21523.1 |
| PJCFHMFC_33 | 72 | 884 | ErmF | ARO:3000498 | ErmF | 98.50 | 101.50 | M17124.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PJCFHMFC_11 | 292502 | 294427 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | Z21523 |
| PJCFHMFC_33 | 84 | 884 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
| PJCFHMFC_64 | 8406 | 9356 | cfxA5 | Unknown Beta-lactam | 86.12 | 98.34 | AY769934 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PJCFHMFC_11 | 292502 | 294424 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_002560998.1 |
| PJCFHMFC_33 | 84 | 881 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
| PJCFHMFC_33 | 1171 | 3093 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.55 | 100.00 | WP_063856407.1 |
| PJCFHMFC_64 | 8405 | 9358 | cfxA5 | broad-spectrum class A beta-lactamase CfxA5 | BLASTX | 83.65 | 99.07 | WP_032946415.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| PJCFHMFC_78 | 394 | 1074 | repUS2 | 683 / 681 | 98.39 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PJCFHMFC_1 | 0.0 | 1.0 | 0.0 |
| PJCFHMFC_2 | 0.0 | 1.0 | 0.0 |
| PJCFHMFC_3 | 0.0 | 1.0 | 0.0 |
| PJCFHMFC_4 | 0.0 | 1.0 | 0.0 |
| PJCFHMFC_5 | 0.0 | 1.0 | 0.0 |
| PJCFHMFC_6 | 0.0 | 1.0 | 0.0 |
| PJCFHMFC_7 | 0.0 | 1.0 | 0.0 |
| PJCFHMFC_8 | 0.0 | 1.0 | 0.0 |
| PJCFHMFC_9 | 0.0 | 1.0 | 0.0 |
| PJCFHMFC_10 | 0.0 | 1.0 | 0.0 |
| PJCFHMFC_11 | 0.0 | 1.0 | 0.0 |
| PJCFHMFC_12 | 0.0 | 1.0 | 0.0 |
| PJCFHMFC_13 | 0.0 | 1.0 | 0.0 |
| PJCFHMFC_14 | 0.0 | 1.0 | 0.0 |
| PJCFHMFC_15 | 0.0 | 1.0 | 0.0 |
| PJCFHMFC_16 | 0.0 | 1.0 | 0.0 |
| PJCFHMFC_17 | 0.0 | 1.0 | 0.0 |
| PJCFHMFC_18 | 0.0 | 1.0 | 0.0 |
| PJCFHMFC_19 | 0.0 | 1.0 | 0.0 |
| PJCFHMFC_20 | 0.0 | 1.0 | 0.0 |
| PJCFHMFC_21 | 0.0 | 1.0 | 0.0 |
| PJCFHMFC_22 | 0.0 | 1.0 | 0.0 |
| PJCFHMFC_23 | 0.0 | 1.0 | 0.0 |
| PJCFHMFC_24 | 0.0 | 1.0 | 0.0 |
| PJCFHMFC_25 | 0.0 | 1.0 | 0.0 |
| PJCFHMFC_26 | 0.0 | 1.0 | 0.0 |
| PJCFHMFC_27 | 1.0 | 0.0 | 1.0 |
| PJCFHMFC_28 | 0.0 | 1.0 | 0.0 |
| PJCFHMFC_29 | 0.0 | 1.0 | 0.0 |
| PJCFHMFC_30 | 0.0 | 1.0 | 0.0 |
| PJCFHMFC_31 | 0.0 | 1.0 | 0.0 |
| PJCFHMFC_32 | 0.0 | 1.0 | 0.0 |
| PJCFHMFC_33 | 0.0 | 1.0 | 0.0 |
| PJCFHMFC_34 | 0.0 | 1.0 | 0.0 |
| PJCFHMFC_35 | 0.0 | 1.0 | 0.0 |
| PJCFHMFC_36 | 0.0 | 1.0 | 0.0 |
| PJCFHMFC_37 | 0.0 | 1.0 | 0.0 |
| PJCFHMFC_38 | 0.0 | 1.0 | 0.0 |
| PJCFHMFC_39 | 0.0 | 1.0 | 0.0 |
| PJCFHMFC_40 | 0.0 | 1.0 | 0.0 |
| PJCFHMFC_41 | 0.0 | 1.0 | 0.0 |
| PJCFHMFC_42 | 0.0 | 1.0 | 0.0 |
| PJCFHMFC_43 | 0.0 | 1.0 | 0.0 |
| PJCFHMFC_44 | 0.0 | 1.0 | 0.0 |
| PJCFHMFC_45 | 0.0 | 1.0 | 0.0 |
| PJCFHMFC_46 | 0.0 | 1.0 | 0.0 |
| PJCFHMFC_47 | 1.0 | 0.0 | 1.0 |
| PJCFHMFC_48 | 0.0 | 1.0 | 0.0 |
| PJCFHMFC_49 | 0.0 | 1.0 | 0.0 |
| PJCFHMFC_50 | 0.0 | 1.0 | 0.0 |
| PJCFHMFC_51 | 0.0 | 1.0 | 0.0 |
| PJCFHMFC_52 | 0.0 | 1.0 | 0.0 |
| PJCFHMFC_53 | 0.0 | 1.0 | 0.0 |
| PJCFHMFC_54 | 0.0 | 1.0 | 0.0 |
| PJCFHMFC_55 | 0.0 | 1.0 | 0.0 |
| PJCFHMFC_56 | 1.0 | 0.0 | 1.0 |
| PJCFHMFC_57 | 0.0 | 1.0 | 0.0 |
| PJCFHMFC_58 | 1.0 | 0.0 | 1.0 |
| PJCFHMFC_59 | 1.0 | 0.0 | 1.0 |
| PJCFHMFC_60 | 0.0 | 1.0 | 0.0 |
| PJCFHMFC_61 | 0.0 | 1.0 | 0.0 |
| PJCFHMFC_62 | 0.0 | 1.0 | 0.0 |
| PJCFHMFC_63 | 1.0 | 0.0 | 1.0 |
| PJCFHMFC_64 | 0.0 | 1.0 | 0.0 |
| PJCFHMFC_65 | 0.0 | 1.0 | 0.0 |
| PJCFHMFC_66 | 0.0 | 1.0 | 0.0 |
| PJCFHMFC_67 | 0.0 | 1.0 | 0.0 |
| PJCFHMFC_68 | 1.0 | 0.0 | 1.0 |
| PJCFHMFC_69 | 1.0 | 0.0 | 1.0 |
| PJCFHMFC_70 | 1.0 | 0.0 | 1.0 |
| PJCFHMFC_71 | 1.0 | 0.0 | 1.0 |
| PJCFHMFC_72 | 1.0 | 0.0 | 1.0 |
| PJCFHMFC_74 | 1.0 | 0.0 | 1.0 |
| PJCFHMFC_75 | 1.0 | 0.0 | 1.0 |
| PJCFHMFC_76 | 1.0 | 0.0 | 1.0 |
| PJCFHMFC_77 | 0.0 | 1.0 | 0.0 |
| PJCFHMFC_78 | 1.0 | 0.0 | 1.0 |
| PJCFHMFC_79 | 1.0 | 0.0 | 1.0 |
| PJCFHMFC_80 | 1.0 | 0.0 | 1.0 |
| PJCFHMFC_81 | 1.0 | 0.0 | 1.0 |
| PJCFHMFC_82 | 0.0 | 1.0 | 0.0 |
| PJCFHMFC_83 | 0.0 | 1.0 | 0.0 |
| PJCFHMFC_84 | 1.0 | 0.0 | 1.0 |
| PJCFHMFC_85 | 0.0 | 1.0 | 0.0 |
| PJCFHMFC_86 | 0.0 | 1.0 | 0.0 |
| PJCFHMFC_87 | 1.0 | 0.0 | 1.0 |
| PJCFHMFC_88 | 0.0 | 1.0 | 0.0 |
| PJCFHMFC_89 | 0.0 | 1.0 | 0.0 |
| PJCFHMFC_90 | 1.0 | 0.0 | 1.0 |
| PJCFHMFC_91 | 1.0 | 0.0 | 1.0 |
| PJCFHMFC_92 | 1.0 | 0.0 | 1.0 |
| PJCFHMFC_93 | 0.0 | 1.0 | 0.0 |
| PJCFHMFC_94 | 1.0 | 0.0 | 1.0 |
| PJCFHMFC_95 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)