Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HKPKIDDD_83 | 149487 | 150377 | CblA-1 | ARO:3002999 | CblA-1 | 96.28 | 100.00 | GQ343019.1 |
| HKPKIDDD_83 | 82295 | 84220 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| HKPKIDDD_2 | 59821 | 61026 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.25 | 100.00 | AF251288.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| HKPKIDDD_83 | 82295 | 84220 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HKPKIDDD_2 | 59287 | 59796 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| HKPKIDDD_83 | 82298 | 84220 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| HKPKIDDD_2 | 59824 | 61026 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.25 | 100.00 | WP_063853729.1 |
| HKPKIDDD_83 | 149487 | 150374 | cblA | CblA family class A beta-lactamase | BLASTX | 96.28 | 100.00 | WP_005827792.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HKPKIDDD_1 | 1.0 | 0.0 | 1.0 |
| HKPKIDDD_2 | 0.0 | 1.0 | 0.0 |
| HKPKIDDD_3 | 0.0 | 1.0 | 0.0 |
| HKPKIDDD_4 | 1.0 | 0.0 | 1.0 |
| HKPKIDDD_6 | 0.0 | 1.0 | 0.0 |
| HKPKIDDD_7 | 0.0 | 1.0 | 0.0 |
| HKPKIDDD_8 | 0.0 | 1.0 | 0.0 |
| HKPKIDDD_9 | 1.0 | 0.0 | 1.0 |
| HKPKIDDD_10 | 0.0 | 1.0 | 0.0 |
| HKPKIDDD_11 | 0.0 | 1.0 | 0.0 |
| HKPKIDDD_12 | 1.0 | 0.0 | 1.0 |
| HKPKIDDD_13 | 1.0 | 0.0 | 1.0 |
| HKPKIDDD_14 | 0.0 | 1.0 | 0.0 |
| HKPKIDDD_15 | 1.0 | 0.0 | 1.0 |
| HKPKIDDD_16 | 0.0 | 1.0 | 0.0 |
| HKPKIDDD_17 | 0.0 | 1.0 | 0.0 |
| HKPKIDDD_18 | 1.0 | 0.0 | 1.0 |
| HKPKIDDD_19 | 0.0 | 1.0 | 0.0 |
| HKPKIDDD_20 | 0.0 | 1.0 | 0.0 |
| HKPKIDDD_21 | 1.0 | 0.0 | 1.0 |
| HKPKIDDD_22 | 0.0 | 1.0 | 0.0 |
| HKPKIDDD_23 | 0.0 | 1.0 | 0.0 |
| HKPKIDDD_24 | 1.0 | 0.0 | 1.0 |
| HKPKIDDD_25 | 0.0 | 1.0 | 0.0 |
| HKPKIDDD_26 | 0.0 | 1.0 | 0.0 |
| HKPKIDDD_27 | 1.0 | 0.0 | 1.0 |
| HKPKIDDD_28 | 1.0 | 0.0 | 1.0 |
| HKPKIDDD_29 | 0.0 | 1.0 | 0.0 |
| HKPKIDDD_30 | 1.0 | 0.0 | 1.0 |
| HKPKIDDD_31 | 0.0 | 1.0 | 0.0 |
| HKPKIDDD_32 | 0.0 | 1.0 | 0.0 |
| HKPKIDDD_33 | 0.0 | 1.0 | 0.0 |
| HKPKIDDD_34 | 0.0 | 1.0 | 0.0 |
| HKPKIDDD_35 | 0.0 | 1.0 | 0.0 |
| HKPKIDDD_36 | 1.0 | 0.0 | 1.0 |
| HKPKIDDD_37 | 0.0 | 1.0 | 0.0 |
| HKPKIDDD_38 | 0.0 | 1.0 | 0.0 |
| HKPKIDDD_39 | 1.0 | 0.0 | 1.0 |
| HKPKIDDD_40 | 0.0 | 1.0 | 0.0 |
| HKPKIDDD_41 | 1.0 | 0.0 | 1.0 |
| HKPKIDDD_42 | 0.0 | 1.0 | 0.0 |
| HKPKIDDD_43 | 0.0 | 1.0 | 0.0 |
| HKPKIDDD_44 | 0.0 | 1.0 | 0.0 |
| HKPKIDDD_45 | 1.0 | 0.0 | 1.0 |
| HKPKIDDD_46 | 0.0 | 1.0 | 0.0 |
| HKPKIDDD_47 | 0.0 | 1.0 | 0.0 |
| HKPKIDDD_48 | 1.0 | 0.0 | 1.0 |
| HKPKIDDD_49 | 0.0 | 1.0 | 0.0 |
| HKPKIDDD_50 | 1.0 | 0.0 | 1.0 |
| HKPKIDDD_51 | 0.0 | 1.0 | 0.0 |
| HKPKIDDD_52 | 1.0 | 0.0 | 1.0 |
| HKPKIDDD_53 | 1.0 | 0.0 | 1.0 |
| HKPKIDDD_54 | 0.0 | 1.0 | 0.0 |
| HKPKIDDD_55 | 0.0 | 1.0 | 0.0 |
| HKPKIDDD_56 | 1.0 | 0.0 | 1.0 |
| HKPKIDDD_58 | 1.0 | 0.0 | 1.0 |
| HKPKIDDD_59 | 0.0 | 1.0 | 0.0 |
| HKPKIDDD_60 | 1.0 | 0.0 | 1.0 |
| HKPKIDDD_61 | 1.0 | 0.0 | 1.0 |
| HKPKIDDD_62 | 1.0 | 0.0 | 1.0 |
| HKPKIDDD_64 | 1.0 | 0.0 | 1.0 |
| HKPKIDDD_65 | 1.0 | 0.0 | 1.0 |
| HKPKIDDD_66 | 1.0 | 0.0 | 1.0 |
| HKPKIDDD_67 | 1.0 | 0.0 | 1.0 |
| HKPKIDDD_68 | 1.0 | 0.0 | 1.0 |
| HKPKIDDD_69 | 0.0 | 1.0 | 0.0 |
| HKPKIDDD_70 | 1.0 | 0.0 | 1.0 |
| HKPKIDDD_71 | 1.0 | 0.0 | 1.0 |
| HKPKIDDD_72 | 1.0 | 0.0 | 1.0 |
| HKPKIDDD_73 | 1.0 | 0.0 | 1.0 |
| HKPKIDDD_74 | 0.0 | 1.0 | 0.0 |
| HKPKIDDD_75 | 1.0 | 0.0 | 1.0 |
| HKPKIDDD_76 | 0.0 | 1.0 | 0.0 |
| HKPKIDDD_77 | 0.0 | 1.0 | 0.0 |
| HKPKIDDD_78 | 1.0 | 0.0 | 1.0 |
| HKPKIDDD_79 | 1.0 | 0.0 | 1.0 |
| HKPKIDDD_80 | 0.0 | 1.0 | 0.0 |
| HKPKIDDD_81 | 1.0 | 0.0 | 1.0 |
| HKPKIDDD_82 | 1.0 | 0.0 | 1.0 |
| HKPKIDDD_83 | 0.0 | 1.0 | 0.0 |
| HKPKIDDD_84 | 1.0 | 0.0 | 1.0 |
| HKPKIDDD_85 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HKPKIDDD_31 | 33847 | 37175 | False | Siphoviridae | VOG0275, |
| HKPKIDDD_47 | 6878 | 20045 | False | Unknown | VOG3992, |
| HKPKIDDD_49 | 3463 | 11879 | False | Unknown | VOG4573, |
Phigaro v2.4.0 (Database: Jan. 2024 release)