Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CBAPCCND_50 | 8233 | 9198 | CfxA3 | ARO:3003003 | CfxA3 | 99.07 | 100.00 | AF472622.2 |
| CBAPCCND_7 | 3313 | 4047 | ErmG | ARO:3000522 | ErmG | 100.00 | 100.00 | L42817.1 |
| CBAPCCND_68 | 289 | 2262 | tet(Q) | ARO:3000191 | tet(Q) | 100.00 | 100.00 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CBAPCCND_7 | 3313 | 4047 | erm(G) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | L42817 |
| CBAPCCND_68 | 289 | 2214 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.90 | 100.00 | Z21523 |
| CBAPCCND_50 | 8233 | 9198 | cfxA3 | Ampicillin | 99.48 | 100.00 | AF472622 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CBAPCCND_7 | 3316 | 4047 | erm(G) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G) | EXACTX | 100.00 | 100.00 | WP_063844787.1 |
| CBAPCCND_68 | 292 | 2214 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_002560998.1 |
| CBAPCCND_50 | 8236 | 9198 | cfxA3 | extended-spectrum class A beta-lactamase CfxA3 | BLASTX | 99.07 | 100.00 | WP_004348227.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| CBAPCCND_56 | 2320 | 2999 | repUS2 | 682 / 681 | 98.53 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CBAPCCND_1 | 0.0 | 1.0 | 0.0 |
| CBAPCCND_2 | 0.0 | 1.0 | 0.0 |
| CBAPCCND_3 | 0.0 | 1.0 | 0.0 |
| CBAPCCND_4 | 0.0 | 1.0 | 0.0 |
| CBAPCCND_5 | 0.0 | 1.0 | 0.0 |
| CBAPCCND_6 | 0.0 | 1.0 | 0.0 |
| CBAPCCND_7 | 0.0 | 1.0 | 0.0 |
| CBAPCCND_8 | 0.0 | 1.0 | 0.0 |
| CBAPCCND_9 | 0.0 | 1.0 | 0.0 |
| CBAPCCND_10 | 0.0 | 1.0 | 0.0 |
| CBAPCCND_11 | 0.0 | 1.0 | 0.0 |
| CBAPCCND_12 | 0.0 | 1.0 | 0.0 |
| CBAPCCND_13 | 0.0 | 1.0 | 0.0 |
| CBAPCCND_14 | 0.0 | 1.0 | 0.0 |
| CBAPCCND_15 | 0.0 | 1.0 | 0.0 |
| CBAPCCND_16 | 0.0 | 1.0 | 0.0 |
| CBAPCCND_17 | 0.0 | 1.0 | 0.0 |
| CBAPCCND_18 | 0.0 | 1.0 | 0.0 |
| CBAPCCND_19 | 0.0 | 1.0 | 0.0 |
| CBAPCCND_20 | 0.0 | 1.0 | 0.0 |
| CBAPCCND_21 | 0.0 | 1.0 | 0.0 |
| CBAPCCND_22 | 0.0 | 1.0 | 0.0 |
| CBAPCCND_23 | 0.0 | 1.0 | 0.0 |
| CBAPCCND_24 | 0.0 | 1.0 | 0.0 |
| CBAPCCND_25 | 0.0 | 1.0 | 0.0 |
| CBAPCCND_26 | 0.0 | 1.0 | 0.0 |
| CBAPCCND_27 | 0.0 | 1.0 | 0.0 |
| CBAPCCND_28 | 0.0 | 1.0 | 0.0 |
| CBAPCCND_29 | 0.0 | 1.0 | 0.0 |
| CBAPCCND_30 | 0.0 | 1.0 | 0.0 |
| CBAPCCND_31 | 0.0 | 1.0 | 0.0 |
| CBAPCCND_32 | 0.0 | 1.0 | 0.0 |
| CBAPCCND_33 | 0.0 | 1.0 | 0.0 |
| CBAPCCND_34 | 0.0 | 1.0 | 0.0 |
| CBAPCCND_35 | 0.0 | 1.0 | 0.0 |
| CBAPCCND_36 | 1.0 | 0.0 | 1.0 |
| CBAPCCND_37 | 0.0 | 1.0 | 0.0 |
| CBAPCCND_38 | 1.0 | 0.0 | 1.0 |
| CBAPCCND_39 | 0.0 | 1.0 | 0.0 |
| CBAPCCND_40 | 0.0 | 1.0 | 0.0 |
| CBAPCCND_41 | 0.0 | 1.0 | 0.0 |
| CBAPCCND_42 | 0.0 | 1.0 | 0.0 |
| CBAPCCND_43 | 0.0 | 1.0 | 0.0 |
| CBAPCCND_44 | 0.0 | 1.0 | 0.0 |
| CBAPCCND_45 | 1.0 | 0.0 | 1.0 |
| CBAPCCND_46 | 0.0 | 1.0 | 0.0 |
| CBAPCCND_47 | 0.0 | 1.0 | 0.0 |
| CBAPCCND_48 | 0.0 | 1.0 | 0.0 |
| CBAPCCND_49 | 0.0 | 1.0 | 0.0 |
| CBAPCCND_50 | 0.0 | 1.0 | 0.0 |
| CBAPCCND_51 | 0.0 | 1.0 | 0.0 |
| CBAPCCND_52 | 1.0 | 0.0 | 1.0 |
| CBAPCCND_53 | 1.0 | 0.0 | 1.0 |
| CBAPCCND_54 | 1.0 | 0.0 | 1.0 |
| CBAPCCND_55 | 0.0 | 1.0 | 0.0 |
| CBAPCCND_56 | 1.0 | 0.0 | 1.0 |
| CBAPCCND_57 | 1.0 | 0.0 | 1.0 |
| CBAPCCND_59 | 1.0 | 0.0 | 1.0 |
| CBAPCCND_60 | 1.0 | 0.0 | 1.0 |
| CBAPCCND_61 | 1.0 | 0.0 | 1.0 |
| CBAPCCND_62 | 1.0 | 0.0 | 1.0 |
| CBAPCCND_63 | 1.0 | 0.0 | 1.0 |
| CBAPCCND_65 | 1.0 | 0.0 | 1.0 |
| CBAPCCND_66 | 0.0 | 1.0 | 0.0 |
| CBAPCCND_67 | 1.0 | 0.0 | 1.0 |
| CBAPCCND_68 | 0.0 | 1.0 | 0.0 |
| CBAPCCND_69 | 0.0 | 1.0 | 0.0 |
| CBAPCCND_71 | 1.0 | 0.0 | 1.0 |
| CBAPCCND_72 | 0.0 | 1.0 | 0.0 |
| CBAPCCND_73 | 1.0 | 0.0 | 1.0 |
| CBAPCCND_74 | 0.0 | 1.0 | 0.0 |
| CBAPCCND_75 | 0.0 | 1.0 | 0.0 |
| CBAPCCND_76 | 0.0 | 1.0 | 0.0 |
| CBAPCCND_77 | 1.0 | 0.0 | 1.0 |
| CBAPCCND_78 | 1.0 | 0.0 | 1.0 |
| CBAPCCND_79 | 1.0 | 0.0 | 1.0 |
| CBAPCCND_80 | 1.0 | 0.0 | 1.0 |
| CBAPCCND_81 | 1.0 | 0.0 | 1.0 |
| CBAPCCND_82 | 1.0 | 0.0 | 1.0 |
| CBAPCCND_83 | 0.0 | 1.0 | 0.0 |
| CBAPCCND_84 | 0.0 | 1.0 | 0.0 |
| CBAPCCND_85 | 0.0 | 1.0 | 0.0 |
| CBAPCCND_86 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CBAPCCND_44 | 51166 | 63036 | False | Unknown | VOG5821, |
Phigaro v2.4.0 (Database: Jan. 2024 release)