Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 1 | 5.10 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| AOBPIFPD_80 | 215727 | 216692 | CfxA4 | ARO:3003005 | CfxA4 | 100.00 | 100.00 | AY769933.1 |
| AOBPIFPD_69 | 358 | 1497 | tet(X1) | ARO:3005166 | tet(X1) | 99.72 | 105.57 | AJ311171.1 |
| AOBPIFPD_73 | 140 | 1306 | tet(X) | ARO:3000205 | tet(X) | 99.74 | 100.00 | M37699.1 |
| AOBPIFPD_3 | 114 | 977 | aadS | ARO:3004683 | aadS | 100.00 | 100.00 | M72415.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| AOBPIFPD_80 | 215727 | 216692 | cfxA4 | Unknown Beta-lactam | 100.00 | 100.00 | AY769933 |
| AOBPIFPD_73 | 140 | 1306 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.91 | 100.00 | M37699 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| AOBPIFPD_3 | 114 | 974 | aadS | aminoglycoside 6-adenylyltransferase AadS | EXACTX | 100.00 | 100.00 | WP_003013318.1 |
| AOBPIFPD_18 | 30204 | 31109 | blaMUN-1 | MUN family extended-spectrum class A beta-lactamase MUN-1 | ALLELEX | 100.00 | 100.00 | WP_206340447.1 |
| AOBPIFPD_80 | 215730 | 216692 | cfxA4 | extended-spectrum class A beta-lactamase CfxA4 | EXACTX | 100.00 | 100.00 | WP_057280848.1 |
| AOBPIFPD_69 | 358 | 1494 | tet(X1) | tetracycline-inactivating monooxygenase Tet(X1) | BLASTX | 99.74 | 100.00 | WP_204376222.1 |
| AOBPIFPD_73 | 143 | 1306 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | BLASTX | 99.74 | 100.00 | WP_008651082.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| AOBPIFPD_35 | 6532 | 4952 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 80.64 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| AOBPIFPD_1 | 0.0 | 1.0 | 0.0 |
| AOBPIFPD_2 | 0.0 | 1.0 | 0.0 |
| AOBPIFPD_3 | 0.0 | 1.0 | 0.0 |
| AOBPIFPD_4 | 0.0 | 1.0 | 0.0 |
| AOBPIFPD_5 | 0.0 | 1.0 | 0.0 |
| AOBPIFPD_6 | 0.0 | 1.0 | 0.0 |
| AOBPIFPD_7 | 0.0 | 1.0 | 0.0 |
| AOBPIFPD_8 | 0.0 | 1.0 | 0.0 |
| AOBPIFPD_9 | 0.0 | 1.0 | 0.0 |
| AOBPIFPD_10 | 0.0 | 1.0 | 0.0 |
| AOBPIFPD_11 | 0.0 | 1.0 | 0.0 |
| AOBPIFPD_12 | 0.0 | 1.0 | 0.0 |
| AOBPIFPD_13 | 0.0 | 1.0 | 0.0 |
| AOBPIFPD_14 | 0.0 | 1.0 | 0.0 |
| AOBPIFPD_15 | 1.0 | 0.0 | 1.0 |
| AOBPIFPD_16 | 0.0 | 1.0 | 0.0 |
| AOBPIFPD_17 | 0.0 | 1.0 | 0.0 |
| AOBPIFPD_18 | 0.0 | 1.0 | 0.0 |
| AOBPIFPD_19 | 0.0 | 1.0 | 0.0 |
| AOBPIFPD_20 | 0.0 | 1.0 | 0.0 |
| AOBPIFPD_21 | 0.0 | 1.0 | 0.0 |
| AOBPIFPD_22 | 0.0 | 1.0 | 0.0 |
| AOBPIFPD_23 | 0.0 | 1.0 | 0.0 |
| AOBPIFPD_24 | 0.0 | 1.0 | 0.0 |
| AOBPIFPD_25 | 1.0 | 0.0 | 1.0 |
| AOBPIFPD_26 | 0.0 | 1.0 | 0.0 |
| AOBPIFPD_27 | 0.0 | 1.0 | 0.0 |
| AOBPIFPD_28 | 0.0 | 1.0 | 0.0 |
| AOBPIFPD_29 | 0.0 | 1.0 | 0.0 |
| AOBPIFPD_30 | 0.0 | 1.0 | 0.0 |
| AOBPIFPD_31 | 0.0 | 1.0 | 0.0 |
| AOBPIFPD_32 | 0.0 | 1.0 | 0.0 |
| AOBPIFPD_33 | 0.0 | 1.0 | 0.0 |
| AOBPIFPD_34 | 0.0 | 1.0 | 0.0 |
| AOBPIFPD_35 | 0.0 | 1.0 | 0.0 |
| AOBPIFPD_36 | 0.0 | 1.0 | 0.0 |
| AOBPIFPD_37 | 1.0 | 0.0 | 1.0 |
| AOBPIFPD_38 | 0.0 | 1.0 | 0.0 |
| AOBPIFPD_39 | 0.0 | 1.0 | 0.0 |
| AOBPIFPD_40 | 1.0 | 0.0 | 1.0 |
| AOBPIFPD_41 | 0.0 | 1.0 | 0.0 |
| AOBPIFPD_42 | 0.0 | 1.0 | 0.0 |
| AOBPIFPD_43 | 0.0 | 1.0 | 0.0 |
| AOBPIFPD_44 | 0.0 | 1.0 | 0.0 |
| AOBPIFPD_45 | 1.0 | 0.0 | 1.0 |
| AOBPIFPD_46 | 1.0 | 0.0 | 1.0 |
| AOBPIFPD_48 | 1.0 | 0.0 | 1.0 |
| AOBPIFPD_49 | 1.0 | 0.0 | 1.0 |
| AOBPIFPD_50 | 1.0 | 0.0 | 1.0 |
| AOBPIFPD_51 | 0.0 | 1.0 | 0.0 |
| AOBPIFPD_52 | 1.0 | 0.0 | 1.0 |
| AOBPIFPD_53 | 0.0 | 1.0 | 0.0 |
| AOBPIFPD_54 | 0.0 | 1.0 | 0.0 |
| AOBPIFPD_55 | 0.0 | 1.0 | 0.0 |
| AOBPIFPD_56 | 0.0 | 1.0 | 0.0 |
| AOBPIFPD_57 | 1.0 | 0.0 | 1.0 |
| AOBPIFPD_58 | 0.0 | 1.0 | 0.0 |
| AOBPIFPD_59 | 1.0 | 0.0 | 1.0 |
| AOBPIFPD_60 | 1.0 | 0.0 | 1.0 |
| AOBPIFPD_61 | 1.0 | 0.0 | 1.0 |
| AOBPIFPD_62 | 0.0 | 1.0 | 0.0 |
| AOBPIFPD_63 | 1.0 | 0.0 | 1.0 |
| AOBPIFPD_64 | 0.0 | 1.0 | 0.0 |
| AOBPIFPD_65 | 0.0 | 1.0 | 0.0 |
| AOBPIFPD_66 | 0.0 | 1.0 | 0.0 |
| AOBPIFPD_67 | 1.0 | 0.0 | 1.0 |
| AOBPIFPD_68 | 1.0 | 0.0 | 1.0 |
| AOBPIFPD_69 | 1.0 | 0.0 | 1.0 |
| AOBPIFPD_70 | 0.0 | 1.0 | 0.0 |
| AOBPIFPD_71 | 1.0 | 0.0 | 1.0 |
| AOBPIFPD_72 | 1.0 | 0.0 | 1.0 |
| AOBPIFPD_73 | 1.0 | 0.0 | 1.0 |
| AOBPIFPD_74 | 1.0 | 0.0 | 1.0 |
| AOBPIFPD_75 | 1.0 | 0.0 | 1.0 |
| AOBPIFPD_76 | 0.0 | 1.0 | 0.0 |
| AOBPIFPD_77 | 1.0 | 0.0 | 1.0 |
| AOBPIFPD_78 | 1.0 | 0.0 | 1.0 |
| AOBPIFPD_79 | 1.0 | 0.0 | 1.0 |
| AOBPIFPD_80 | 0.0 | 1.0 | 0.0 |
| AOBPIFPD_81 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| AOBPIFPD_17 | 62875 | 72626 | True | Unknown | VOG8253, |
Phigaro v2.4.0 (Database: Jan. 2024 release)