Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| AFJEDPOC_133 | 48967 | 49800 | ErmF | ARO:3000498 | ErmF | 99.62 | 104.14 | M17124.1 |
| AFJEDPOC_133 | 46861 | 47724 | aadS | ARO:3004683 | aadS | 100.00 | 100.00 | M72415.1 |
| AFJEDPOC_99 | 31524 | 33497 | tet(Q) | ARO:3000191 | tet(Q) | 96.35 | 100.00 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| AFJEDPOC_133 | 48967 | 49767 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | M17808 |
| AFJEDPOC_99 | 31524 | 33449 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| AFJEDPOC_133 | 46861 | 47721 | aadS | aminoglycoside 6-adenylyltransferase AadS | EXACTX | 100.00 | 100.00 | WP_003013318.1 |
| AFJEDPOC_133 | 48970 | 49767 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | EXACTX | 100.00 | 100.00 | WP_002682030.1 |
| AFJEDPOC_99 | 31527 | 33449 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| AFJEDPOC_1 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_2 | 1.0 | 0.0 | 1.0 |
| AFJEDPOC_3 | 1.0 | 0.0 | 1.0 |
| AFJEDPOC_4 | 1.0 | 0.0 | 1.0 |
| AFJEDPOC_5 | 1.0 | 0.0 | 1.0 |
| AFJEDPOC_6 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_7 | 1.0 | 0.0 | 1.0 |
| AFJEDPOC_8 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_9 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_10 | 1.0 | 0.0 | 1.0 |
| AFJEDPOC_11 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_12 | 1.0 | 0.0 | 1.0 |
| AFJEDPOC_13 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_14 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_15 | 1.0 | 0.0 | 1.0 |
| AFJEDPOC_16 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_17 | 1.0 | 0.0 | 1.0 |
| AFJEDPOC_19 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_20 | 1.0 | 0.0 | 1.0 |
| AFJEDPOC_21 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_22 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_23 | 1.0 | 0.0 | 1.0 |
| AFJEDPOC_24 | 1.0 | 0.0 | 1.0 |
| AFJEDPOC_25 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_26 | 1.0 | 0.0 | 1.0 |
| AFJEDPOC_27 | 1.0 | 0.0 | 1.0 |
| AFJEDPOC_28 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_29 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_30 | 1.0 | 0.0 | 1.0 |
| AFJEDPOC_31 | 1.0 | 0.0 | 1.0 |
| AFJEDPOC_32 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_33 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_34 | 1.0 | 0.0 | 1.0 |
| AFJEDPOC_35 | 1.0 | 0.0 | 1.0 |
| AFJEDPOC_36 | 1.0 | 0.0 | 1.0 |
| AFJEDPOC_37 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_38 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_39 | 1.0 | 0.0 | 1.0 |
| AFJEDPOC_40 | 1.0 | 0.0 | 1.0 |
| AFJEDPOC_41 | 1.0 | 0.0 | 1.0 |
| AFJEDPOC_42 | 1.0 | 0.0 | 1.0 |
| AFJEDPOC_43 | 1.0 | 0.0 | 1.0 |
| AFJEDPOC_44 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_45 | 1.0 | 0.0 | 1.0 |
| AFJEDPOC_46 | 1.0 | 0.0 | 1.0 |
| AFJEDPOC_47 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_48 | 1.0 | 0.0 | 1.0 |
| AFJEDPOC_49 | 1.0 | 0.0 | 1.0 |
| AFJEDPOC_50 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_51 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_52 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_53 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_54 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_55 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_56 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_57 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_58 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_59 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_60 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_61 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_62 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_63 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_64 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_65 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_66 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_67 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_68 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_69 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_70 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_71 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_72 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_73 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_74 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_75 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_76 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_77 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_78 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_79 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_80 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_81 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_82 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_83 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_84 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_85 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_86 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_87 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_88 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_89 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_90 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_91 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_92 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_93 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_94 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_95 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_96 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_97 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_98 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_99 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_100 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_101 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_102 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_103 | 1.0 | 0.0 | 1.0 |
| AFJEDPOC_104 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_105 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_106 | 1.0 | 0.0 | 1.0 |
| AFJEDPOC_107 | 1.0 | 0.0 | 1.0 |
| AFJEDPOC_108 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_109 | 1.0 | 0.0 | 1.0 |
| AFJEDPOC_110 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_111 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_112 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_113 | 1.0 | 0.0 | 1.0 |
| AFJEDPOC_114 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_115 | 1.0 | 0.0 | 1.0 |
| AFJEDPOC_116 | 1.0 | 0.0 | 1.0 |
| AFJEDPOC_117 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_118 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_119 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_120 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_121 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_122 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_123 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_124 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_125 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_126 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_127 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_128 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_129 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_130 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_131 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_132 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_133 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_134 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_135 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_136 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_137 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_138 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_139 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_140 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_141 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_142 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_143 | 0.0 | 1.0 | 0.0 |
| AFJEDPOC_144 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| AFJEDPOC_81 | 3159 | 15728 | False | Unknown | VOG3699, |
| AFJEDPOC_98 | 23836 | 31270 | False | Unknown | VOG4573, |
| AFJEDPOC_115 | 2571 | 11767 | False | Unknown | VOG4573, |
Phigaro v2.4.0 (Database: Jan. 2024 release)