Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PHLNBIHI_2 | 80824 | 82749 | tet(Q) | ARO:3000191 | tet(Q) | 97.04 | 97.56 | Z21523.1 |
| PHLNBIHI_53 | 9894 | 10784 | CblA-1 | ARO:3002999 | CblA-1 | 98.99 | 100.00 | GQ343019.1 |
| PHLNBIHI_33 | 1171 | 3096 | tet(Q) | ARO:3000191 | tet(Q) | 89.08 | 97.56 | Z21523.1 |
| PHLNBIHI_33 | 84 | 884 | ErmF | ARO:3000498 | ErmF | 98.50 | 100.00 | M17124.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PHLNBIHI_2 | 80824 | 82749 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | X58717 |
| PHLNBIHI_33 | 84 | 884 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PHLNBIHI_2 | 80824 | 82746 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_004293868.1 |
| PHLNBIHI_53 | 9897 | 10784 | cblA | CblA family class A beta-lactamase | BLASTX | 98.99 | 100.00 | WP_005827792.1 |
| PHLNBIHI_33 | 84 | 881 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
| PHLNBIHI_33 | 1171 | 3093 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.55 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| PHLNBIHI_39 | 394 | 1074 | repUS2 | 683 / 681 | 98.39 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PHLNBIHI_1 | 0.0 | 1.0 | 0.0 |
| PHLNBIHI_2 | 0.0 | 1.0 | 0.0 |
| PHLNBIHI_3 | 0.0 | 1.0 | 0.0 |
| PHLNBIHI_4 | 0.0 | 1.0 | 0.0 |
| PHLNBIHI_5 | 0.0 | 1.0 | 0.0 |
| PHLNBIHI_6 | 0.0 | 1.0 | 0.0 |
| PHLNBIHI_7 | 0.0 | 1.0 | 0.0 |
| PHLNBIHI_8 | 0.0 | 1.0 | 0.0 |
| PHLNBIHI_9 | 0.0 | 1.0 | 0.0 |
| PHLNBIHI_10 | 0.0 | 1.0 | 0.0 |
| PHLNBIHI_11 | 0.0 | 1.0 | 0.0 |
| PHLNBIHI_12 | 0.0 | 1.0 | 0.0 |
| PHLNBIHI_13 | 0.0 | 1.0 | 0.0 |
| PHLNBIHI_14 | 1.0 | 0.0 | 1.0 |
| PHLNBIHI_15 | 0.0 | 1.0 | 0.0 |
| PHLNBIHI_16 | 0.0 | 1.0 | 0.0 |
| PHLNBIHI_17 | 0.0 | 1.0 | 0.0 |
| PHLNBIHI_18 | 0.0 | 1.0 | 0.0 |
| PHLNBIHI_19 | 1.0 | 0.0 | 1.0 |
| PHLNBIHI_20 | 0.0 | 1.0 | 0.0 |
| PHLNBIHI_21 | 1.0 | 0.0 | 1.0 |
| PHLNBIHI_22 | 0.0 | 1.0 | 0.0 |
| PHLNBIHI_23 | 0.0 | 1.0 | 0.0 |
| PHLNBIHI_24 | 0.0 | 1.0 | 0.0 |
| PHLNBIHI_25 | 1.0 | 0.0 | 1.0 |
| PHLNBIHI_26 | 0.0 | 1.0 | 0.0 |
| PHLNBIHI_27 | 0.0 | 1.0 | 0.0 |
| PHLNBIHI_28 | 1.0 | 0.0 | 1.0 |
| PHLNBIHI_29 | 1.0 | 0.0 | 1.0 |
| PHLNBIHI_30 | 0.0 | 1.0 | 0.0 |
| PHLNBIHI_31 | 1.0 | 0.0 | 1.0 |
| PHLNBIHI_32 | 1.0 | 0.0 | 1.0 |
| PHLNBIHI_33 | 0.0 | 1.0 | 0.0 |
| PHLNBIHI_34 | 1.0 | 0.0 | 1.0 |
| PHLNBIHI_35 | 1.0 | 0.0 | 1.0 |
| PHLNBIHI_37 | 1.0 | 0.0 | 1.0 |
| PHLNBIHI_38 | 1.0 | 0.0 | 1.0 |
| PHLNBIHI_39 | 1.0 | 0.0 | 1.0 |
| PHLNBIHI_40 | 1.0 | 0.0 | 1.0 |
| PHLNBIHI_41 | 1.0 | 0.0 | 1.0 |
| PHLNBIHI_42 | 1.0 | 0.0 | 1.0 |
| PHLNBIHI_43 | 1.0 | 0.0 | 1.0 |
| PHLNBIHI_44 | 0.0 | 1.0 | 0.0 |
| PHLNBIHI_45 | 1.0 | 0.0 | 1.0 |
| PHLNBIHI_46 | 1.0 | 0.0 | 1.0 |
| PHLNBIHI_47 | 0.0 | 1.0 | 0.0 |
| PHLNBIHI_48 | 1.0 | 0.0 | 1.0 |
| PHLNBIHI_49 | 1.0 | 0.0 | 1.0 |
| PHLNBIHI_50 | 1.0 | 0.0 | 1.0 |
| PHLNBIHI_51 | 0.0 | 1.0 | 0.0 |
| PHLNBIHI_52 | 0.0 | 1.0 | 0.0 |
| PHLNBIHI_53 | 0.0 | 1.0 | 0.0 |
| PHLNBIHI_54 | 0.0 | 1.0 | 0.0 |
| PHLNBIHI_55 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PHLNBIHI_52 | 226963 | 240030 | False | Unknown | VOG0572, |
| PHLNBIHI_54 | 101079 | 111790 | False | Unknown | VOG5821, |
Phigaro v2.4.0 (Database: Jan. 2024 release)