Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 0 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CHKNGANP_52 | 17335 | 19308 | tet(Q) | ARO:3000191 | tet(Q) | 97.11 | 100.00 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CHKNGANP_52 | 17335 | 19260 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | X58717 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CHKNGANP_52 | 17338 | 19260 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_004293868.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CHKNGANP_1 | 0.0 | 1.0 | 0.0 |
| CHKNGANP_2 | 0.0 | 1.0 | 0.0 |
| CHKNGANP_3 | 0.0 | 1.0 | 0.0 |
| CHKNGANP_4 | 0.0 | 1.0 | 0.0 |
| CHKNGANP_5 | 0.0 | 1.0 | 0.0 |
| CHKNGANP_6 | 0.0 | 1.0 | 0.0 |
| CHKNGANP_7 | 0.0 | 1.0 | 0.0 |
| CHKNGANP_8 | 0.0 | 1.0 | 0.0 |
| CHKNGANP_9 | 0.0 | 1.0 | 0.0 |
| CHKNGANP_10 | 0.0 | 1.0 | 0.0 |
| CHKNGANP_11 | 0.0 | 1.0 | 0.0 |
| CHKNGANP_12 | 0.0 | 1.0 | 0.0 |
| CHKNGANP_13 | 0.0 | 1.0 | 0.0 |
| CHKNGANP_14 | 0.0 | 1.0 | 0.0 |
| CHKNGANP_15 | 0.0 | 1.0 | 0.0 |
| CHKNGANP_16 | 0.0 | 1.0 | 0.0 |
| CHKNGANP_17 | 0.0 | 1.0 | 0.0 |
| CHKNGANP_18 | 0.0 | 1.0 | 0.0 |
| CHKNGANP_19 | 0.0 | 1.0 | 0.0 |
| CHKNGANP_20 | 0.0 | 1.0 | 0.0 |
| CHKNGANP_21 | 0.0 | 1.0 | 0.0 |
| CHKNGANP_22 | 0.0 | 1.0 | 0.0 |
| CHKNGANP_23 | 0.0 | 1.0 | 0.0 |
| CHKNGANP_24 | 0.0 | 1.0 | 0.0 |
| CHKNGANP_25 | 0.0 | 1.0 | 0.0 |
| CHKNGANP_26 | 0.0 | 1.0 | 0.0 |
| CHKNGANP_27 | 0.0 | 1.0 | 0.0 |
| CHKNGANP_28 | 0.0 | 1.0 | 0.0 |
| CHKNGANP_29 | 0.0 | 1.0 | 0.0 |
| CHKNGANP_30 | 0.0 | 1.0 | 0.0 |
| CHKNGANP_31 | 0.0 | 1.0 | 0.0 |
| CHKNGANP_32 | 0.0 | 1.0 | 0.0 |
| CHKNGANP_33 | 0.0 | 1.0 | 0.0 |
| CHKNGANP_34 | 0.0 | 1.0 | 0.0 |
| CHKNGANP_35 | 0.0 | 1.0 | 0.0 |
| CHKNGANP_36 | 0.0 | 1.0 | 0.0 |
| CHKNGANP_37 | 0.0 | 1.0 | 0.0 |
| CHKNGANP_38 | 0.0 | 1.0 | 0.0 |
| CHKNGANP_39 | 0.0 | 1.0 | 0.0 |
| CHKNGANP_40 | 1.0 | 0.0 | 1.0 |
| CHKNGANP_41 | 0.0 | 1.0 | 0.0 |
| CHKNGANP_42 | 0.0 | 1.0 | 0.0 |
| CHKNGANP_43 | 0.0 | 1.0 | 0.0 |
| CHKNGANP_44 | 0.0 | 1.0 | 0.0 |
| CHKNGANP_45 | 0.0 | 1.0 | 0.0 |
| CHKNGANP_46 | 0.0 | 1.0 | 0.0 |
| CHKNGANP_47 | 0.0 | 1.0 | 0.0 |
| CHKNGANP_48 | 0.0 | 1.0 | 0.0 |
| CHKNGANP_49 | 0.0 | 1.0 | 0.0 |
| CHKNGANP_50 | 1.0 | 0.0 | 1.0 |
| CHKNGANP_51 | 0.0 | 1.0 | 0.0 |
| CHKNGANP_52 | 0.0 | 1.0 | 0.0 |
| CHKNGANP_53 | 0.0 | 1.0 | 0.0 |
| CHKNGANP_54 | 0.0 | 1.0 | 0.0 |
| CHKNGANP_55 | 0.0 | 1.0 | 0.0 |
| CHKNGANP_56 | 0.0 | 1.0 | 0.0 |
| CHKNGANP_57 | 0.0 | 1.0 | 0.0 |
| CHKNGANP_58 | 0.0 | 1.0 | 0.0 |
| CHKNGANP_59 | 0.0 | 1.0 | 0.0 |
| CHKNGANP_60 | 0.0 | 1.0 | 0.0 |
| CHKNGANP_61 | 0.0 | 1.0 | 0.0 |
| CHKNGANP_62 | 0.0 | 1.0 | 0.0 |
| CHKNGANP_63 | 0.0 | 1.0 | 0.0 |
| CHKNGANP_64 | 0.0 | 1.0 | 0.0 |
| CHKNGANP_65 | 1.0 | 0.0 | 1.0 |
| CHKNGANP_66 | 0.0 | 1.0 | 0.0 |
| CHKNGANP_67 | 0.0 | 1.0 | 0.0 |
| CHKNGANP_68 | 0.0 | 1.0 | 0.0 |
| CHKNGANP_69 | 0.0 | 1.0 | 0.0 |
| CHKNGANP_70 | 1.0 | 0.0 | 1.0 |
| CHKNGANP_71 | 0.0 | 1.0 | 0.0 |
| CHKNGANP_72 | 1.0 | 0.0 | 1.0 |
| CHKNGANP_74 | 1.0 | 0.0 | 1.0 |
| CHKNGANP_75 | 1.0 | 0.0 | 1.0 |
| CHKNGANP_77 | 0.0 | 1.0 | 0.0 |
| CHKNGANP_78 | 1.0 | 0.0 | 1.0 |
| CHKNGANP_79 | 1.0 | 0.0 | 1.0 |
| CHKNGANP_80 | 1.0 | 0.0 | 1.0 |
| CHKNGANP_81 | 0.0 | 1.0 | 0.0 |
| CHKNGANP_82 | 0.0 | 1.0 | 0.0 |
| CHKNGANP_83 | 1.0 | 0.0 | 1.0 |
| CHKNGANP_84 | 1.0 | 0.0 | 1.0 |
| CHKNGANP_85 | 0.0 | 1.0 | 0.0 |
| CHKNGANP_86 | 1.0 | 0.0 | 1.0 |
| CHKNGANP_87 | 1.0 | 0.0 | 1.0 |
| CHKNGANP_88 | 0.0 | 1.0 | 0.0 |
| CHKNGANP_89 | 1.0 | 0.0 | 1.0 |
| CHKNGANP_90 | 1.0 | 0.0 | 1.0 |
| CHKNGANP_91 | 0.0 | 1.0 | 0.0 |
| CHKNGANP_92 | 0.0 | 1.0 | 0.0 |
| CHKNGANP_93 | 0.0 | 1.0 | 0.0 |
| CHKNGANP_94 | 1.0 | 0.0 | 1.0 |
| CHKNGANP_95 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CHKNGANP_4 | 129755 | 136134 | True | Unknown | VOG4552, |
| CHKNGANP_11 | 533129 | 545478 | False | Unknown | VOG0083, |
Phigaro v2.4.0 (Database: Jan. 2024 release)