Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HACHAAEG_22 | 245042 | 246967 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| HACHAAEG_75 | 76997 | 77830 | ErmF | ARO:3000498 | ErmF | 99.62 | 104.14 | M17124.1 |
| HACHAAEG_75 | 74891 | 75754 | aadS | ARO:3004683 | aadS | 100.00 | 100.00 | M72415.1 |
| HACHAAEG_43 | 9739 | 10629 | CblA-1 | ARO:3002999 | CblA-1 | 98.99 | 100.00 | GQ343019.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| HACHAAEG_75 | 76997 | 77797 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | M17808 |
| HACHAAEG_22 | 245042 | 246967 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HACHAAEG_75 | 74891 | 75751 | aadS | aminoglycoside 6-adenylyltransferase AadS | EXACTX | 100.00 | 100.00 | WP_003013318.1 |
| HACHAAEG_75 | 77000 | 77797 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | EXACTX | 100.00 | 100.00 | WP_002682030.1 |
| HACHAAEG_22 | 245042 | 246964 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| HACHAAEG_43 | 9742 | 10629 | cblA | CblA family class A beta-lactamase | BLASTX | 98.99 | 100.00 | WP_005827792.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| HACHAAEG_65 | 606 | 1285 | repUS2 | 682 / 681 | 98.53 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HACHAAEG_1 | 0.0 | 1.0 | 0.0 |
| HACHAAEG_2 | 0.0 | 1.0 | 0.0 |
| HACHAAEG_3 | 0.0 | 1.0 | 0.0 |
| HACHAAEG_4 | 0.0 | 1.0 | 0.0 |
| HACHAAEG_5 | 0.0 | 1.0 | 0.0 |
| HACHAAEG_6 | 0.0 | 1.0 | 0.0 |
| HACHAAEG_7 | 0.0 | 1.0 | 0.0 |
| HACHAAEG_8 | 0.0 | 1.0 | 0.0 |
| HACHAAEG_9 | 0.0 | 1.0 | 0.0 |
| HACHAAEG_10 | 0.0 | 1.0 | 0.0 |
| HACHAAEG_11 | 0.0 | 1.0 | 0.0 |
| HACHAAEG_12 | 0.0 | 1.0 | 0.0 |
| HACHAAEG_13 | 0.0 | 1.0 | 0.0 |
| HACHAAEG_14 | 0.0 | 1.0 | 0.0 |
| HACHAAEG_15 | 0.0 | 1.0 | 0.0 |
| HACHAAEG_16 | 0.0 | 1.0 | 0.0 |
| HACHAAEG_17 | 0.0 | 1.0 | 0.0 |
| HACHAAEG_18 | 0.0 | 1.0 | 0.0 |
| HACHAAEG_19 | 0.0 | 1.0 | 0.0 |
| HACHAAEG_20 | 0.0 | 1.0 | 0.0 |
| HACHAAEG_21 | 0.0 | 1.0 | 0.0 |
| HACHAAEG_22 | 0.0 | 1.0 | 0.0 |
| HACHAAEG_23 | 0.0 | 1.0 | 0.0 |
| HACHAAEG_24 | 0.0 | 1.0 | 0.0 |
| HACHAAEG_25 | 0.0 | 1.0 | 0.0 |
| HACHAAEG_26 | 0.0 | 1.0 | 0.0 |
| HACHAAEG_27 | 0.0 | 1.0 | 0.0 |
| HACHAAEG_28 | 0.0 | 1.0 | 0.0 |
| HACHAAEG_29 | 0.0 | 1.0 | 0.0 |
| HACHAAEG_30 | 0.0 | 1.0 | 0.0 |
| HACHAAEG_31 | 1.0 | 0.0 | 1.0 |
| HACHAAEG_32 | 0.0 | 1.0 | 0.0 |
| HACHAAEG_33 | 0.0 | 1.0 | 0.0 |
| HACHAAEG_34 | 0.0 | 1.0 | 0.0 |
| HACHAAEG_35 | 1.0 | 0.0 | 1.0 |
| HACHAAEG_36 | 0.0 | 1.0 | 0.0 |
| HACHAAEG_37 | 0.0 | 1.0 | 0.0 |
| HACHAAEG_38 | 0.0 | 1.0 | 0.0 |
| HACHAAEG_39 | 0.0 | 1.0 | 0.0 |
| HACHAAEG_40 | 1.0 | 0.0 | 1.0 |
| HACHAAEG_41 | 1.0 | 0.0 | 1.0 |
| HACHAAEG_42 | 0.0 | 1.0 | 0.0 |
| HACHAAEG_43 | 0.0 | 1.0 | 0.0 |
| HACHAAEG_44 | 0.0 | 1.0 | 0.0 |
| HACHAAEG_45 | 1.0 | 0.0 | 1.0 |
| HACHAAEG_46 | 1.0 | 0.0 | 1.0 |
| HACHAAEG_47 | 0.0 | 1.0 | 0.0 |
| HACHAAEG_48 | 0.0 | 1.0 | 0.0 |
| HACHAAEG_49 | 0.0 | 1.0 | 0.0 |
| HACHAAEG_50 | 0.0 | 1.0 | 0.0 |
| HACHAAEG_51 | 1.0 | 0.0 | 1.0 |
| HACHAAEG_52 | 0.0 | 1.0 | 0.0 |
| HACHAAEG_53 | 0.0 | 1.0 | 0.0 |
| HACHAAEG_54 | 0.0 | 1.0 | 0.0 |
| HACHAAEG_55 | 0.0 | 1.0 | 0.0 |
| HACHAAEG_56 | 1.0 | 0.0 | 1.0 |
| HACHAAEG_58 | 1.0 | 0.0 | 1.0 |
| HACHAAEG_59 | 1.0 | 0.0 | 1.0 |
| HACHAAEG_60 | 1.0 | 0.0 | 1.0 |
| HACHAAEG_61 | 1.0 | 0.0 | 1.0 |
| HACHAAEG_62 | 1.0 | 0.0 | 1.0 |
| HACHAAEG_63 | 1.0 | 0.0 | 1.0 |
| HACHAAEG_64 | 0.0 | 1.0 | 0.0 |
| HACHAAEG_65 | 1.0 | 0.0 | 1.0 |
| HACHAAEG_66 | 0.0 | 1.0 | 0.0 |
| HACHAAEG_67 | 1.0 | 0.0 | 1.0 |
| HACHAAEG_68 | 1.0 | 0.0 | 1.0 |
| HACHAAEG_69 | 1.0 | 0.0 | 1.0 |
| HACHAAEG_70 | 1.0 | 0.0 | 1.0 |
| HACHAAEG_71 | 1.0 | 0.0 | 1.0 |
| HACHAAEG_72 | 1.0 | 0.0 | 1.0 |
| HACHAAEG_73 | 1.0 | 0.0 | 1.0 |
| HACHAAEG_74 | 0.0 | 1.0 | 0.0 |
| HACHAAEG_75 | 0.0 | 1.0 | 0.0 |
| HACHAAEG_76 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HACHAAEG_1 | 19109 | 29983 | False | Siphoviridae | VOG0749, |
| HACHAAEG_8 | 38021 | 44797 | True | Siphoviridae | VOG7108, |
| HACHAAEG_22 | 265712 | 276933 | False | Unknown | VOG3992, |
Phigaro v2.4.0 (Database: Jan. 2024 release)