Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CJLHHPMI_97 | 42766 | 43731 | CfxA4 | ARO:3003005 | CfxA4 | 100.00 | 100.00 | AY769933.1 |
| CJLHHPMI_123 | 12943 | 14916 | tet(Q) | ARO:3000191 | tet(Q) | 96.35 | 100.00 | Z21523.1 |
| CJLHHPMI_130 | 113 | 913 | ErmF | ARO:3000498 | ErmF | 97.74 | 100.00 | M17124.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CJLHHPMI_97 | 42766 | 43731 | cfxA4 | Unknown Beta-lactam | 100.00 | 100.00 | AY769933 |
| CJLHHPMI_123 | 12991 | 14916 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| CJLHHPMI_130 | 113 | 913 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.25 | 100.00 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CJLHHPMI_97 | 42769 | 43731 | cfxA4 | extended-spectrum class A beta-lactamase CfxA4 | EXACTX | 100.00 | 100.00 | WP_057280848.1 |
| CJLHHPMI_123 | 12991 | 14913 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| CJLHHPMI_130 | 1126 | 1965 | estT | macrolide hydrolase EstT | BLASTX | 98.58 | 100.00 | WP_185148407.1 |
| CJLHHPMI_130 | 113 | 910 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.12 | 100.00 | WP_002682030.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| CJLHHPMI_37 | 462 | 1042 | repUS2 | 584 / 681 | 80.48 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CJLHHPMI_1 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_2 | 1.0 | 0.0 | 1.0 |
| CJLHHPMI_3 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_4 | 1.0 | 0.0 | 1.0 |
| CJLHHPMI_5 | 1.0 | 0.0 | 1.0 |
| CJLHHPMI_6 | 1.0 | 0.0 | 1.0 |
| CJLHHPMI_7 | 1.0 | 0.0 | 1.0 |
| CJLHHPMI_8 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_9 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_10 | 1.0 | 0.0 | 1.0 |
| CJLHHPMI_11 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_12 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_13 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_14 | 1.0 | 0.0 | 1.0 |
| CJLHHPMI_15 | 1.0 | 0.0 | 1.0 |
| CJLHHPMI_16 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_18 | 1.0 | 0.0 | 1.0 |
| CJLHHPMI_19 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_20 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_21 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_22 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_23 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_24 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_25 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_26 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_27 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_28 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_29 | 1.0 | 0.0 | 1.0 |
| CJLHHPMI_30 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_31 | 1.0 | 0.0 | 1.0 |
| CJLHHPMI_32 | 1.0 | 0.0 | 1.0 |
| CJLHHPMI_33 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_34 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_35 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_36 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_37 | 1.0 | 0.0 | 1.0 |
| CJLHHPMI_38 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_39 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_40 | 1.0 | 0.0 | 1.0 |
| CJLHHPMI_41 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_42 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_43 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_44 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_45 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_46 | 1.0 | 0.0 | 1.0 |
| CJLHHPMI_47 | 1.0 | 0.0 | 1.0 |
| CJLHHPMI_48 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_49 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_50 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_51 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_52 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_53 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_54 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_55 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_56 | 1.0 | 0.0 | 1.0 |
| CJLHHPMI_57 | 1.0 | 0.0 | 1.0 |
| CJLHHPMI_58 | 1.0 | 0.0 | 1.0 |
| CJLHHPMI_59 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_60 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_61 | 1.0 | 0.0 | 1.0 |
| CJLHHPMI_62 | 1.0 | 0.0 | 1.0 |
| CJLHHPMI_63 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_64 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_65 | 1.0 | 0.0 | 1.0 |
| CJLHHPMI_66 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_67 | 1.0 | 0.0 | 1.0 |
| CJLHHPMI_68 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_69 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_70 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_71 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_72 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_73 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_74 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_75 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_76 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_77 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_78 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_79 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_80 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_81 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_82 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_83 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_84 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_85 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_86 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_87 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_88 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_89 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_90 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_91 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_92 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_93 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_94 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_95 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_96 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_97 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_98 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_99 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_100 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_101 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_102 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_103 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_104 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_105 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_106 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_107 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_108 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_109 | 1.0 | 0.0 | 1.0 |
| CJLHHPMI_110 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_111 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_112 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_113 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_114 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_115 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_116 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_117 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_118 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_119 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_120 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_121 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_122 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_123 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_124 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_125 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_126 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_127 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_128 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_129 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_130 | 1.0 | 0.0 | 1.0 |
| CJLHHPMI_131 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_132 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_133 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_134 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_135 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_136 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_137 | 1.0 | 0.0 | 1.0 |
| CJLHHPMI_138 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_139 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_140 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_141 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_142 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_143 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_144 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_145 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_146 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_147 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_148 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_149 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_150 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_151 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_152 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_153 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_154 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_155 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_156 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_157 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_158 | 0.0 | 1.0 | 0.0 |
| CJLHHPMI_159 | 1.0 | 0.0 | 1.0 |
| CJLHHPMI_160 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CJLHHPMI_22 | 59600 | 66248 | False | Siphoviridae | VOG0204, |
| CJLHHPMI_94 | 156893 | 165078 | False | Unknown | VOG0572, |
| CJLHHPMI_149 | 64440 | 69729 | False | Myoviridae | VOG1931, |
Phigaro v2.4.0 (Database: Jan. 2024 release)