Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KADGHDLE_4 | 66283 | 67293 | cepA | ARO:3003559 | cepA | 99.67 | 112.00 | U05883.1 |
| KADGHDLE_33 | 54688 | 56613 | tet(Q) | ARO:3000191 | tet(Q) | 96.10 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| KADGHDLE_4 | 66283 | 67185 | cepA | Unknown Beta-lactam | 99.78 | 100.00 | FR688022 |
| KADGHDLE_33 | 54688 | 56613 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 96.83 | 100.00 | X58717 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KADGHDLE_4 | 66286 | 67185 | cepA | CepA family extended-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005816369.1 |
| KADGHDLE_33 | 54688 | 56610 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 98.75 | 100.00 | WP_063856409.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| KADGHDLE_1 | 0.0 | 1.0 | 0.0 |
| KADGHDLE_2 | 0.0 | 1.0 | 0.0 |
| KADGHDLE_3 | 0.0 | 1.0 | 0.0 |
| KADGHDLE_4 | 0.0 | 1.0 | 0.0 |
| KADGHDLE_5 | 0.0 | 1.0 | 0.0 |
| KADGHDLE_6 | 0.0 | 1.0 | 0.0 |
| KADGHDLE_7 | 0.0 | 1.0 | 0.0 |
| KADGHDLE_8 | 0.0 | 1.0 | 0.0 |
| KADGHDLE_9 | 0.0 | 1.0 | 0.0 |
| KADGHDLE_10 | 0.0 | 1.0 | 0.0 |
| KADGHDLE_11 | 0.0 | 1.0 | 0.0 |
| KADGHDLE_12 | 0.0 | 1.0 | 0.0 |
| KADGHDLE_13 | 0.0 | 1.0 | 0.0 |
| KADGHDLE_14 | 1.0 | 0.0 | 1.0 |
| KADGHDLE_15 | 1.0 | 0.0 | 1.0 |
| KADGHDLE_17 | 1.0 | 0.0 | 1.0 |
| KADGHDLE_18 | 0.0 | 1.0 | 0.0 |
| KADGHDLE_19 | 0.0 | 1.0 | 0.0 |
| KADGHDLE_21 | 0.0 | 1.0 | 0.0 |
| KADGHDLE_25 | 0.0 | 1.0 | 0.0 |
| KADGHDLE_27 | 0.0 | 1.0 | 0.0 |
| KADGHDLE_28 | 0.0 | 1.0 | 0.0 |
| KADGHDLE_29 | 0.0 | 1.0 | 0.0 |
| KADGHDLE_30 | 0.0 | 1.0 | 0.0 |
| KADGHDLE_31 | 0.0 | 1.0 | 0.0 |
| KADGHDLE_32 | 0.0 | 1.0 | 0.0 |
| KADGHDLE_33 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| KADGHDLE_28 | 46546 | 59711 | False | Unknown | VOG1837, |
| KADGHDLE_31 | 175900 | 184450 | False | Siphoviridae | VOG4581, |
Phigaro v2.4.0 (Database: Jan. 2024 release)