Probiotic potential risk score


ARGs VFs PGs PPRS
3003.00

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
GFMNJLCA_1112130023274tet(Q)ARO:3000191tet(Q)100.0097.56Z21523.1
GFMNJLCA_3172063221837Mef(En2)ARO:3004659Mef(En2)99.25100.00AF251288.1

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
GFMNJLCA_1112134823273tet(Q)Doxycycline, Tetracycline, Minocycline100.00100.00Z21523

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
GFMNJLCA_3172186222371lnu(AN2)lincosamide nucleotidyltransferase Lnu(AN2)EXACTX100.00100.00WP_004308783.1
GFMNJLCA_1112134823270tet(Q)tetracycline resistance ribosomal protection protein Tet(Q)EXACTX100.00100.00WP_002560998.1
GFMNJLCA_3172063221834mef(En2)macrolide efflux MFS transporter Mef(En2)BLASTX99.25100.00WP_063853729.1

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence factors


Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
No hit found

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

Pathogenic genes


PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
No hit found

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

Plasmid


PlasmidFinder

Query ID Begin End Plasmid Query / Template Identity Accession no.
GFMNJLCA_18110501729repUS2682 / 68198.53BFU30316

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID Prediction Chromosome Plasmid
GFMNJLCA_11.00.01.0
GFMNJLCA_20.01.00.0
GFMNJLCA_30.01.00.0
GFMNJLCA_40.01.00.0
GFMNJLCA_50.01.00.0
GFMNJLCA_61.00.01.0
GFMNJLCA_70.01.00.0
GFMNJLCA_80.01.00.0
GFMNJLCA_91.00.01.0
GFMNJLCA_100.01.00.0
GFMNJLCA_110.01.00.0
GFMNJLCA_120.01.00.0
GFMNJLCA_130.01.00.0
GFMNJLCA_140.01.00.0
GFMNJLCA_150.01.00.0
GFMNJLCA_160.01.00.0
GFMNJLCA_170.01.00.0
GFMNJLCA_180.01.00.0
GFMNJLCA_190.01.00.0
GFMNJLCA_200.01.00.0
GFMNJLCA_210.01.00.0
GFMNJLCA_220.01.00.0
GFMNJLCA_231.00.01.0
GFMNJLCA_240.01.00.0
GFMNJLCA_250.01.00.0
GFMNJLCA_260.01.00.0
GFMNJLCA_270.01.00.0
GFMNJLCA_280.01.00.0
GFMNJLCA_291.00.01.0
GFMNJLCA_300.01.00.0
GFMNJLCA_310.01.00.0
GFMNJLCA_320.01.00.0
GFMNJLCA_330.01.00.0
GFMNJLCA_340.01.00.0
GFMNJLCA_350.01.00.0
GFMNJLCA_360.01.00.0
GFMNJLCA_370.01.00.0
GFMNJLCA_380.01.00.0
GFMNJLCA_390.01.00.0
GFMNJLCA_400.01.00.0
GFMNJLCA_411.00.01.0
GFMNJLCA_420.01.00.0
GFMNJLCA_430.01.00.0
GFMNJLCA_440.01.00.0
GFMNJLCA_451.00.01.0
GFMNJLCA_460.01.00.0
GFMNJLCA_471.00.01.0
GFMNJLCA_481.00.01.0
GFMNJLCA_490.01.00.0
GFMNJLCA_500.01.00.0
GFMNJLCA_510.01.00.0
GFMNJLCA_521.00.01.0
GFMNJLCA_530.01.00.0
GFMNJLCA_540.01.00.0
GFMNJLCA_550.01.00.0
GFMNJLCA_560.01.00.0
GFMNJLCA_570.01.00.0
GFMNJLCA_580.01.00.0
GFMNJLCA_590.01.00.0
GFMNJLCA_600.01.00.0
GFMNJLCA_610.01.00.0
GFMNJLCA_620.01.00.0
GFMNJLCA_630.01.00.0
GFMNJLCA_640.01.00.0
GFMNJLCA_651.00.01.0
GFMNJLCA_660.01.00.0
GFMNJLCA_670.01.00.0
GFMNJLCA_680.01.00.0
GFMNJLCA_691.00.01.0
GFMNJLCA_700.01.00.0
GFMNJLCA_711.00.01.0
GFMNJLCA_720.01.00.0
GFMNJLCA_730.01.00.0
GFMNJLCA_740.01.00.0
GFMNJLCA_750.01.00.0
GFMNJLCA_761.00.01.0
GFMNJLCA_770.01.00.0
GFMNJLCA_780.01.00.0
GFMNJLCA_790.01.00.0
GFMNJLCA_800.01.00.0
GFMNJLCA_810.01.00.0
GFMNJLCA_821.00.01.0
GFMNJLCA_830.01.00.0
GFMNJLCA_840.01.00.0
GFMNJLCA_851.00.01.0
GFMNJLCA_860.01.00.0
GFMNJLCA_870.01.00.0
GFMNJLCA_880.01.00.0
GFMNJLCA_890.01.00.0
GFMNJLCA_900.01.00.0
GFMNJLCA_910.01.00.0
GFMNJLCA_920.01.00.0
GFMNJLCA_930.01.00.0
GFMNJLCA_940.01.00.0
GFMNJLCA_950.01.00.0
GFMNJLCA_960.01.00.0
GFMNJLCA_971.00.01.0
GFMNJLCA_980.01.00.0
GFMNJLCA_990.01.00.0
GFMNJLCA_1001.00.01.0
GFMNJLCA_1010.01.00.0
GFMNJLCA_1021.00.01.0
GFMNJLCA_1030.01.00.0
GFMNJLCA_1041.00.01.0
GFMNJLCA_1050.01.00.0
GFMNJLCA_1061.00.01.0
GFMNJLCA_1070.01.00.0
GFMNJLCA_1081.00.01.0
GFMNJLCA_1090.01.00.0
GFMNJLCA_1100.01.00.0
GFMNJLCA_1110.01.00.0
GFMNJLCA_1120.01.00.0
GFMNJLCA_1130.01.00.0
GFMNJLCA_1140.01.00.0
GFMNJLCA_1150.01.00.0
GFMNJLCA_1160.01.00.0
GFMNJLCA_1171.00.01.0
GFMNJLCA_1181.00.01.0
GFMNJLCA_1191.00.01.0
GFMNJLCA_1201.00.01.0
GFMNJLCA_1210.01.00.0
GFMNJLCA_1220.01.00.0
GFMNJLCA_1240.01.00.0
GFMNJLCA_1251.00.01.0
GFMNJLCA_1260.01.00.0
GFMNJLCA_1270.01.00.0
GFMNJLCA_1280.01.00.0
GFMNJLCA_1290.01.00.0
GFMNJLCA_1300.01.00.0
GFMNJLCA_1311.00.01.0
GFMNJLCA_1320.01.00.0
GFMNJLCA_1330.01.00.0
GFMNJLCA_1341.00.01.0
GFMNJLCA_1351.00.01.0
GFMNJLCA_1361.00.01.0
GFMNJLCA_1370.01.00.0
GFMNJLCA_1381.00.01.0
GFMNJLCA_1390.01.00.0
GFMNJLCA_1400.01.00.0
GFMNJLCA_1410.01.00.0
GFMNJLCA_1420.01.00.0
GFMNJLCA_1431.00.01.0
GFMNJLCA_1440.01.00.0
GFMNJLCA_1451.00.01.0
GFMNJLCA_1460.01.00.0
GFMNJLCA_1471.00.01.0
GFMNJLCA_1481.00.01.0
GFMNJLCA_1490.01.00.0
GFMNJLCA_1500.01.00.0
GFMNJLCA_1510.01.00.0
GFMNJLCA_1521.00.01.0
GFMNJLCA_1530.01.00.0
GFMNJLCA_1540.01.00.0
GFMNJLCA_1550.01.00.0
GFMNJLCA_1561.00.01.0
GFMNJLCA_1570.01.00.0
GFMNJLCA_1581.00.01.0
GFMNJLCA_1591.00.01.0
GFMNJLCA_1600.01.00.0
GFMNJLCA_1610.01.00.0
GFMNJLCA_1621.00.01.0
GFMNJLCA_1631.00.01.0
GFMNJLCA_1641.00.01.0
GFMNJLCA_1650.01.00.0
GFMNJLCA_1660.01.00.0
GFMNJLCA_1670.01.00.0
GFMNJLCA_1680.01.00.0
GFMNJLCA_1691.00.01.0
GFMNJLCA_1701.00.01.0
GFMNJLCA_1710.01.00.0
GFMNJLCA_1721.00.01.0
GFMNJLCA_1730.01.00.0
GFMNJLCA_1741.00.01.0
GFMNJLCA_1751.00.01.0
GFMNJLCA_1760.01.00.0
GFMNJLCA_1770.01.00.0
GFMNJLCA_1781.00.01.0
GFMNJLCA_1790.01.00.0
GFMNJLCA_1800.01.00.0
GFMNJLCA_1811.00.01.0
GFMNJLCA_1820.01.00.0
GFMNJLCA_1831.00.01.0
GFMNJLCA_1841.00.01.0
GFMNJLCA_1851.00.01.0
GFMNJLCA_1861.00.01.0
GFMNJLCA_1871.00.01.0
GFMNJLCA_1880.01.00.0
GFMNJLCA_1891.00.01.0
GFMNJLCA_1901.00.01.0
GFMNJLCA_1910.01.00.0
GFMNJLCA_1920.01.00.0
GFMNJLCA_1930.01.00.0
GFMNJLCA_1940.01.00.0
GFMNJLCA_1951.00.01.0
GFMNJLCA_1961.00.01.0
GFMNJLCA_1970.01.00.0
GFMNJLCA_1980.01.00.0
GFMNJLCA_1990.01.00.0
GFMNJLCA_2000.01.00.0
GFMNJLCA_2011.00.01.0
GFMNJLCA_2020.01.00.0
GFMNJLCA_2031.00.01.0
GFMNJLCA_2040.01.00.0
GFMNJLCA_2050.01.00.0
GFMNJLCA_2060.01.00.0
GFMNJLCA_2070.01.00.0
GFMNJLCA_2080.01.00.0
GFMNJLCA_2090.01.00.0
GFMNJLCA_2100.01.00.0
GFMNJLCA_2111.00.01.0
GFMNJLCA_2120.01.00.0
GFMNJLCA_2130.01.00.0
GFMNJLCA_2140.01.00.0
GFMNJLCA_2151.00.01.0
GFMNJLCA_2161.00.01.0
GFMNJLCA_2170.01.00.0
GFMNJLCA_2180.01.00.0
GFMNJLCA_2191.00.01.0
GFMNJLCA_2200.01.00.0
GFMNJLCA_2210.01.00.0
GFMNJLCA_2220.01.00.0
GFMNJLCA_2231.00.01.0
GFMNJLCA_2240.01.00.0
GFMNJLCA_2251.00.01.0
GFMNJLCA_2260.01.00.0
GFMNJLCA_2271.00.01.0
GFMNJLCA_2280.01.00.0
GFMNJLCA_2290.01.00.0
GFMNJLCA_2301.00.01.0
GFMNJLCA_2311.00.01.0
GFMNJLCA_2320.01.00.0
GFMNJLCA_2330.01.00.0
GFMNJLCA_2340.01.00.0
GFMNJLCA_2351.00.01.0
GFMNJLCA_2360.01.00.0
GFMNJLCA_2370.01.00.0
GFMNJLCA_2381.00.01.0
GFMNJLCA_2391.00.01.0
GFMNJLCA_2401.00.01.0
GFMNJLCA_2410.01.00.0
GFMNJLCA_2421.00.01.0
GFMNJLCA_2430.01.00.0
GFMNJLCA_2451.00.01.0
GFMNJLCA_2461.00.01.0
GFMNJLCA_2470.01.00.0
GFMNJLCA_2481.00.01.0
GFMNJLCA_2491.00.01.0
GFMNJLCA_2501.00.01.0
GFMNJLCA_2510.01.00.0
GFMNJLCA_2520.01.00.0
GFMNJLCA_2530.01.00.0
GFMNJLCA_2541.00.01.0
GFMNJLCA_2551.00.01.0
GFMNJLCA_2561.00.01.0
GFMNJLCA_2570.01.00.0
GFMNJLCA_2581.00.01.0
GFMNJLCA_2591.00.01.0
GFMNJLCA_2600.01.00.0
GFMNJLCA_2611.00.01.0
GFMNJLCA_2621.00.01.0
GFMNJLCA_2631.00.01.0
GFMNJLCA_2640.01.00.0
GFMNJLCA_2650.01.00.0
GFMNJLCA_2660.01.00.0
GFMNJLCA_2670.01.00.0
GFMNJLCA_2680.01.00.0
GFMNJLCA_2690.01.00.0
GFMNJLCA_2700.01.00.0
GFMNJLCA_2710.01.00.0
GFMNJLCA_2720.01.00.0
GFMNJLCA_2730.01.00.0
GFMNJLCA_2740.01.00.0
GFMNJLCA_2751.00.01.0
GFMNJLCA_2760.01.00.0
GFMNJLCA_2770.01.00.0
GFMNJLCA_2780.01.00.0
GFMNJLCA_2790.01.00.0
GFMNJLCA_2800.01.00.0
GFMNJLCA_2810.01.00.0
GFMNJLCA_2820.01.00.0
GFMNJLCA_2830.01.00.0
GFMNJLCA_2840.01.00.0
GFMNJLCA_2851.00.01.0
GFMNJLCA_2860.01.00.0
GFMNJLCA_2870.01.00.0
GFMNJLCA_2880.01.00.0
GFMNJLCA_2890.01.00.0
GFMNJLCA_2900.01.00.0
GFMNJLCA_2910.01.00.0
GFMNJLCA_2920.01.00.0
GFMNJLCA_2930.01.00.0
GFMNJLCA_2940.01.00.0
GFMNJLCA_2950.01.00.0
GFMNJLCA_2960.01.00.0
GFMNJLCA_2970.01.00.0
GFMNJLCA_2980.01.00.0
GFMNJLCA_2990.01.00.0
GFMNJLCA_3000.01.00.0
GFMNJLCA_3010.01.00.0
GFMNJLCA_3020.01.00.0
GFMNJLCA_3030.01.00.0
GFMNJLCA_3040.01.00.0
GFMNJLCA_3050.01.00.0
GFMNJLCA_3060.01.00.0
GFMNJLCA_3070.01.00.0
GFMNJLCA_3081.00.01.0
GFMNJLCA_3090.01.00.0
GFMNJLCA_3100.01.00.0
GFMNJLCA_3110.01.00.0
GFMNJLCA_3121.00.01.0
GFMNJLCA_3130.01.00.0
GFMNJLCA_3140.01.00.0
GFMNJLCA_3150.01.00.0
GFMNJLCA_3160.01.00.0
GFMNJLCA_3170.01.00.0
GFMNJLCA_3180.01.00.0
GFMNJLCA_3191.00.01.0
GFMNJLCA_3200.01.00.0
GFMNJLCA_3210.01.00.0
GFMNJLCA_3220.01.00.0
GFMNJLCA_3230.01.00.0
GFMNJLCA_3241.00.01.0
GFMNJLCA_3250.01.00.0
GFMNJLCA_3260.01.00.0
GFMNJLCA_3270.01.00.0
GFMNJLCA_3280.01.00.0
GFMNJLCA_3290.01.00.0
GFMNJLCA_3300.01.00.0
GFMNJLCA_3310.01.00.0
GFMNJLCA_3321.00.01.0
GFMNJLCA_3330.01.00.0
GFMNJLCA_3340.01.00.0
GFMNJLCA_3351.00.01.0
GFMNJLCA_3361.00.01.0
GFMNJLCA_3370.01.00.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Prophage


Phigaro

Query ID Begin End Transposable Taxonomy pVOGs
No hit found

Phigaro v2.4.0 (Database: Jan. 2024 release)


Insertion sequence (IS) elements