Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 6 | 0 | 0 | 6.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DJPAIEPB_71 | 219961 | 220761 | ErmF | ARO:3000498 | ErmF | 97.74 | 100.00 | M17124.1 |
| DJPAIEPB_71 | 218516 | 219655 | tet(X1) | ARO:3005166 | tet(X1) | 99.72 | 105.57 | AJ311171.1 |
| DJPAIEPB_71 | 217181 | 218317 | tet(X) | ARO:3000205 | tet(X) | 99.47 | 97.42 | M37699.1 |
| DJPAIEPB_71 | 216142 | 217005 | aadS | ARO:3004683 | aadS | 100.00 | 100.00 | M72415.1 |
| DJPAIEPB_66 | 22154 | 23044 | CblA-1 | ARO:3002999 | CblA-1 | 99.32 | 100.00 | GQ343019.1 |
| DJPAIEPB_60 | 112 | 2082 | tet(Q) | ARO:3000191 | tet(Q) | 96.84 | 99.85 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| DJPAIEPB_60 | 112 | 2007 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 98.44 | X58717 |
| DJPAIEPB_71 | 219961 | 220761 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.88 | 100.00 | M62487 |
| DJPAIEPB_71 | 217181 | 218347 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.83 | 100.00 | M37699 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DJPAIEPB_71 | 216145 | 217005 | aadS | aminoglycoside 6-adenylyltransferase AadS | EXACTX | 100.00 | 100.00 | WP_003013318.1 |
| DJPAIEPB_71 | 217184 | 218347 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | EXACTX | 100.00 | 100.00 | WP_008651082.1 |
| DJPAIEPB_71 | 218519 | 219655 | tet(X1) | tetracycline-inactivating monooxygenase Tet(X1) | BLASTX | 99.74 | 100.00 | WP_204376222.1 |
| DJPAIEPB_71 | 219961 | 220758 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 99.62 | 100.00 | WP_063844771.1 |
| DJPAIEPB_60 | 115 | 2016 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 98.91 | WP_004293868.1 |
| DJPAIEPB_66 | 22154 | 23041 | cblA | CblA family class A beta-lactamase | BLASTX | 99.32 | 100.00 | WP_005827792.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| DJPAIEPB_50 | 1379 | 2058 | repUS2 | 682 / 681 | 98.53 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DJPAIEPB_1 | 0.0 | 1.0 | 0.0 |
| DJPAIEPB_2 | 0.0 | 1.0 | 0.0 |
| DJPAIEPB_3 | 0.0 | 1.0 | 0.0 |
| DJPAIEPB_4 | 0.0 | 1.0 | 0.0 |
| DJPAIEPB_5 | 0.0 | 1.0 | 0.0 |
| DJPAIEPB_6 | 0.0 | 1.0 | 0.0 |
| DJPAIEPB_7 | 0.0 | 1.0 | 0.0 |
| DJPAIEPB_8 | 0.0 | 1.0 | 0.0 |
| DJPAIEPB_9 | 0.0 | 1.0 | 0.0 |
| DJPAIEPB_10 | 0.0 | 1.0 | 0.0 |
| DJPAIEPB_11 | 0.0 | 1.0 | 0.0 |
| DJPAIEPB_12 | 0.0 | 1.0 | 0.0 |
| DJPAIEPB_13 | 0.0 | 1.0 | 0.0 |
| DJPAIEPB_14 | 0.0 | 1.0 | 0.0 |
| DJPAIEPB_15 | 0.0 | 1.0 | 0.0 |
| DJPAIEPB_16 | 0.0 | 1.0 | 0.0 |
| DJPAIEPB_17 | 0.0 | 1.0 | 0.0 |
| DJPAIEPB_18 | 0.0 | 1.0 | 0.0 |
| DJPAIEPB_19 | 0.0 | 1.0 | 0.0 |
| DJPAIEPB_20 | 0.0 | 1.0 | 0.0 |
| DJPAIEPB_21 | 0.0 | 1.0 | 0.0 |
| DJPAIEPB_22 | 0.0 | 1.0 | 0.0 |
| DJPAIEPB_23 | 0.0 | 1.0 | 0.0 |
| DJPAIEPB_24 | 0.0 | 1.0 | 0.0 |
| DJPAIEPB_25 | 0.0 | 1.0 | 0.0 |
| DJPAIEPB_26 | 0.0 | 1.0 | 0.0 |
| DJPAIEPB_27 | 0.0 | 1.0 | 0.0 |
| DJPAIEPB_28 | 0.0 | 1.0 | 0.0 |
| DJPAIEPB_29 | 0.0 | 1.0 | 0.0 |
| DJPAIEPB_30 | 0.0 | 1.0 | 0.0 |
| DJPAIEPB_31 | 1.0 | 0.0 | 1.0 |
| DJPAIEPB_32 | 0.0 | 1.0 | 0.0 |
| DJPAIEPB_33 | 0.0 | 1.0 | 0.0 |
| DJPAIEPB_34 | 1.0 | 0.0 | 1.0 |
| DJPAIEPB_35 | 0.0 | 1.0 | 0.0 |
| DJPAIEPB_36 | 0.0 | 1.0 | 0.0 |
| DJPAIEPB_37 | 1.0 | 0.0 | 1.0 |
| DJPAIEPB_38 | 1.0 | 0.0 | 1.0 |
| DJPAIEPB_39 | 1.0 | 0.0 | 1.0 |
| DJPAIEPB_40 | 1.0 | 0.0 | 1.0 |
| DJPAIEPB_42 | 0.0 | 1.0 | 0.0 |
| DJPAIEPB_43 | 1.0 | 0.0 | 1.0 |
| DJPAIEPB_44 | 0.0 | 1.0 | 0.0 |
| DJPAIEPB_45 | 0.0 | 1.0 | 0.0 |
| DJPAIEPB_46 | 1.0 | 0.0 | 1.0 |
| DJPAIEPB_47 | 1.0 | 0.0 | 1.0 |
| DJPAIEPB_48 | 1.0 | 0.0 | 1.0 |
| DJPAIEPB_49 | 1.0 | 0.0 | 1.0 |
| DJPAIEPB_50 | 1.0 | 0.0 | 1.0 |
| DJPAIEPB_51 | 1.0 | 0.0 | 1.0 |
| DJPAIEPB_52 | 1.0 | 0.0 | 1.0 |
| DJPAIEPB_53 | 1.0 | 0.0 | 1.0 |
| DJPAIEPB_54 | 0.0 | 1.0 | 0.0 |
| DJPAIEPB_55 | 0.0 | 1.0 | 0.0 |
| DJPAIEPB_57 | 1.0 | 0.0 | 1.0 |
| DJPAIEPB_58 | 0.0 | 1.0 | 0.0 |
| DJPAIEPB_59 | 1.0 | 0.0 | 1.0 |
| DJPAIEPB_60 | 1.0 | 0.0 | 1.0 |
| DJPAIEPB_61 | 1.0 | 0.0 | 1.0 |
| DJPAIEPB_62 | 1.0 | 0.0 | 1.0 |
| DJPAIEPB_63 | 1.0 | 0.0 | 1.0 |
| DJPAIEPB_64 | 1.0 | 0.0 | 1.0 |
| DJPAIEPB_65 | 1.0 | 0.0 | 1.0 |
| DJPAIEPB_66 | 0.0 | 1.0 | 0.0 |
| DJPAIEPB_67 | 1.0 | 0.0 | 1.0 |
| DJPAIEPB_68 | 0.0 | 1.0 | 0.0 |
| DJPAIEPB_69 | 1.0 | 0.0 | 1.0 |
| DJPAIEPB_70 | 1.0 | 0.0 | 1.0 |
| DJPAIEPB_71 | 0.0 | 1.0 | 0.0 |
| DJPAIEPB_72 | 0.0 | 1.0 | 0.0 |
| DJPAIEPB_73 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| DJPAIEPB_22 | 185813 | 193169 | False | Unknown | VOG5122, |
Phigaro v2.4.0 (Database: Jan. 2024 release)